Aliases for piR-39545 Gene

Subcategory (RNA class) for piR-39545 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39545 Gene

  • PiR-39545 161

No data available for External Ids for piR-39545 Gene

Summaries for piR-39545 Gene

GeneCards Summary for piR-39545 Gene

piR-39545 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39545 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39545 Gene

Genomics for piR-39545 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39545 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J119865 Enhancer 0.3 ENCODE 600.7 +1.4 1371 1 CEBPB piR-39545 ADAM30 piR-61534-004 NBPF7 lnc-ADAM30-1
GH01J119870 Enhancer 0.7 ENCODE 0.7 -4.0 -3983 0.2 CTCF RXRB REST RAD21 IRF2 CEBPA CEBPB CTBP1 ZBTB48 YY1 ADAM30 REG4 piR-39545 NOTCH2P1 lnc-PHGDH-3 NBPF7 lnc-ADAM30-1
GH01J119873 Enhancer 0.9 Ensembl ENCODE 0.4 -6.7 -6671 2.4 IKZF1 REST DPF2 HDAC1 TCF12 EP300 NFE2 HDAC2 TBL1XR1 TRIM24 ADAM30 REG4 GAPDHP32 piR-39545 NOTCH2P1 lnc-PHGDH-3 NBPF7 lnc-ADAM30-1
GH01J119882 Enhancer 0.7 Ensembl ENCODE 0.4 -16.5 -16471 4 SCRT2 MGA NFE2 MNT MAFG ATF4 ZNF407 NFE2L2 NOTCH2P1 lnc-PHGDH-3 ADAM30 piR-39545 NBPF7 lnc-ADAM30-1
GH01J119879 Enhancer 0.3 Ensembl 0.4 -12.5 -12471 0.4 RARA REG4 NOTCH2P1 lnc-PHGDH-3 piR-39545 ADAM30 NBPF7 lnc-ADAM30-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39545 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39545 Gene

Genomic Locations for piR-39545 Gene
chr1:119,867,104-119,867,130
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand

Genomic View for piR-39545 Gene

Genes around piR-39545 on UCSC Golden Path with GeneCards custom track
piR-39545 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39545 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39545 Gene

Proteins for piR-39545 Gene

Post-translational modifications for piR-39545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39545 Gene

Domains & Families for piR-39545 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39545 Gene

Function for piR-39545 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39545 Gene

Localization for piR-39545 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39545 Gene

Pathways & Interactions for piR-39545 Gene

PathCards logo

SuperPathways for piR-39545 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39545 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39545 Gene

Drugs & Compounds for piR-39545 Gene

No Compound Related Data Available

Transcripts for piR-39545 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39545 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000156EDA_9606 piRNA 27 1

ENA: DQ601479.1:1..27:ncRNA,

piR-39545 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39545 Gene

No ASD Table

Relevant External Links for piR-39545 Gene

GeneLoc Exon Structure for
piR-39545

No data available for mRNA/cDNA for piR-39545 Gene

Expression for piR-39545 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39545 Gene

Orthologs for piR-39545 Gene

No data available for Orthologs and Evolution for piR-39545 Gene

Paralogs for piR-39545 Gene

No data available for Paralogs for piR-39545 Gene

Variants for piR-39545 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39545 Gene

Disorders for piR-39545 Gene

No disorders were found for piR-39545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39545 Gene

Publications for piR-39545 Gene

No publications were found for piR-39545 Gene.

No data available for Mastermind for piR-39545 Gene

Products for piR-39545 Gene

Sources for piR-39545 Gene