Aliases for piR-39505 Gene

Subcategory (RNA class) for piR-39505 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39505 Gene

  • PiR-39505 161

No data available for External Ids for piR-39505 Gene

Summaries for piR-39505 Gene

GeneCards Summary for piR-39505 Gene

piR-39505 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39505 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39505 Gene

Genomics for piR-39505 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39505 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J103081 Enhancer 0.3 Ensembl 600.7 +0.5 494 0.2 RFX1 POLR2A piR-39505 AS3MT MARCKSL1P1 piR-58089 NT5C2 CNNM2
GH10J103069 Enhancer 0.9 Ensembl ENCODE 0.4 -10.4 -10406 2.4 CTCF ZNF143 REST RAD21 IKZF2 TRIM22 YY1 ARID3A RELB RUNX3 AS3MT BORCS7 CNNM2 INA RNU11-3P ARL3 SFXN2 MARCKSL1P1 piR-39505 piR-41406-010
GH10J103038 Enhancer 1.3 UCNEbase Ensembl ENCODE 0.3 -38.3 -38329 7.9 CTCF TEAD4 ZNF692 PKNOX1 ZNF24 ZNF600 SOX6 TCF12 EP300 SCRT2 AS3MT CNNM2 INA RNU11-3P ARL3 SFXN2 piR-41406-010 piR-39505 NT5C2
GH10J103052 Enhancer 1 ENCODE 0.3 -26.5 -26492 2.8 GATAD2A CTCF TFE3 RFX1 SOX13 NFKBIZ RCOR2 ZNF143 ZIC2 RXRB AS3MT BORCS7 piR-41406-010 piR-39505 CNNM2 NT5C2
GH10J103077 Enhancer 0.3 ENCODE 0.7 -2.8 -2805 0.9 POLR2A BCL3 AS3MT piR-39505 piR-41406-010 NT5C2 CNNM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39505 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39505 Gene

Genomic Locations for piR-39505 Gene
chr10:103,080,807-103,080,832
(GRCh38/hg38)
Size:
26 bases
Orientation:
Plus strand

Genomic View for piR-39505 Gene

Genes around piR-39505 on UCSC Golden Path with GeneCards custom track
piR-39505 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39505 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39505 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39505 Gene

Proteins for piR-39505 Gene

Post-translational modifications for piR-39505 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39505 Gene

Domains & Families for piR-39505 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39505 Gene

Function for piR-39505 Gene

Phenotypes From GWAS Catalog for piR-39505 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39505 Gene

Localization for piR-39505 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39505 Gene

Pathways & Interactions for piR-39505 Gene

PathCards logo

SuperPathways for piR-39505 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39505 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39505 Gene

Drugs & Compounds for piR-39505 Gene

No Compound Related Data Available

Transcripts for piR-39505 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39505 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000363E96_9606 piRNA 26 1

ENA: DQ601439.1:1..26:ncRNA,

piR-39505 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39505 Gene

No ASD Table

Relevant External Links for piR-39505 Gene

GeneLoc Exon Structure for
piR-39505

No data available for mRNA/cDNA for piR-39505 Gene

Expression for piR-39505 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39505 Gene

Orthologs for piR-39505 Gene

No data available for Orthologs and Evolution for piR-39505 Gene

Paralogs for piR-39505 Gene

No data available for Paralogs for piR-39505 Gene

Variants for piR-39505 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39505 Gene

Disorders for piR-39505 Gene

No disorders were found for piR-39505 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39505 Gene

Publications for piR-39505 Gene

No publications were found for piR-39505 Gene.

No data available for Mastermind for piR-39505 Gene

Products for piR-39505 Gene

Sources for piR-39505 Gene