Aliases for piR-39490 Gene

Subcategory (RNA class) for piR-39490 Gene

piRNA

Number of RNA Genes sources:

1 / 14

Aliases for piR-39490 Gene

  • PiR-39490 164

No data available for External Ids for piR-39490 Gene

Summaries for piR-39490 Gene

GeneCards Summary for piR-39490 Gene

piR-39490 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39490 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39490 Gene

Genomics for piR-39490 Gene

GeneHancer (GH) Regulatory Elements for piR-39490 Gene

Promoters and enhancers for piR-39490 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J038850 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 500.7 +1.0 1002 4.1 USF1 GTF2E2 ZBTB11 AFF1 TOE1 MYC NR2F2 RELA NFIC ZBTB17 piR-39490 PLEKHA2 TACC1 RF00017-6978 RF00017-6976
GH08J038849 Promoter/Enhancer 0.6 Ensembl ENCODE 500.7 -1.3 -1289 0.3 POLR2A piR-39490 ENSG00000253829 TACC1 RF00017-6976
GH08J038855 Promoter/Enhancer 1 Ensembl ENCODE 0.4 +5.2 5220 1 CTCF REST RAD21 TRIM22 SMC3 SRF POLR2H GATA3 HDAC2 ZNF654 RF00017-6978 PLEKHA2 ENSG00000253645 HTRA4 ASH2L TACC1 piR-39490 RF00017-6976
GH08J038846 Enhancer 0.6 ENCODE dbSUPER 0.7 -3.1 -3101 2.9 SPI1 FEZF1 SP7 POLR2A ENSG00000253829 piR-39490 TACC1 RF00017-6976
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39490 on UCSC Golden Path with GeneCards custom track

Genomic Locations for piR-39490 Gene

Genomic Locations for piR-39490 Gene
chr8:38,851,144-38,851,172
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand

Genomic View for piR-39490 Gene

Genes around piR-39490 on UCSC Golden Path with GeneCards custom track

piR-39490 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39490 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39490 Gene

Proteins for piR-39490 Gene

Post-translational modifications for piR-39490 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39490 Gene

Domains & Families for piR-39490 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39490 Gene

Function for piR-39490 Gene

miRNA for piR-39490 Gene

miRTarBase miRNAs that target piR-39490

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for piR-39490 Gene

Localization for piR-39490 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39490 Gene

Pathways & Interactions for piR-39490 Gene

PathCards logo

SuperPathways for piR-39490 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for piR-39490 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39490 Gene

Drugs & Compounds for piR-39490 Gene

No Compound Related Data Available

Transcripts for piR-39490 Gene

mRNA/cDNA for piR-39490 Gene

1 RNACentral transcripts :
1 ENA transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39490 Gene

No ASD Table

Relevant External Links for piR-39490 Gene

GeneLoc Exon Structure for
piR-39490

Expression for piR-39490 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39490 Gene

Orthologs for piR-39490 Gene

No data available for Orthologs and Evolution for piR-39490 Gene

Paralogs for piR-39490 Gene

No data available for Paralogs for piR-39490 Gene

Variants for piR-39490 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39490 Gene

Disorders for piR-39490 Gene

No disorders were found for piR-39490 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39490 Gene

Publications for piR-39490 Gene

No publications were found for piR-39490 Gene.

No data available for Mastermind for piR-39490 Gene

Products for piR-39490 Gene

Sources for piR-39490 Gene