Aliases for piR-39488-298 Gene

Subcategory (RNA class) for piR-39488-298 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39488-298 Gene

No data available for External Ids for piR-39488-298 Gene

Summaries for piR-39488-298 Gene

GeneCards Summary for piR-39488-298 Gene

piR-39488-298 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39488-298 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39488-298 Gene

Genomics for piR-39488-298 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39488-298 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J088264 Enhancer 0.3 Ensembl 600.7 +1.9 1934 1.8 SCRT2 ZNF766 piR-31162-469 piR-39488-298 piR-45471-560 piR-55654-478 piR-49732-546 piR-56759-532 piR-61028-531 EIF4A1P13 ENSG00000207094 lnc-SRI-1
GH07J088266 Enhancer 0.2 Ensembl 600.7 +0.6 633 0.4 piR-36393-491 piR-31162-469 piR-39488-298 piR-45471-560 piR-55654-478 piR-55655-526 piR-56022-520 piR-43099-551 piR-49732-546 piR-50308-592
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39488-298 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39488-298 Gene

Genomic Locations for piR-39488-298 Gene
chr7:88,266,800-88,266,834
(GRCh38/hg38)
Size:
35 bases
Orientation:
Minus strand

Genomic View for piR-39488-298 Gene

Genes around piR-39488-298 on UCSC Golden Path with GeneCards custom track
piR-39488-298 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39488-298 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39488-298 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39488-298 Gene

Proteins for piR-39488-298 Gene

Post-translational modifications for piR-39488-298 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39488-298 Gene

Domains & Families for piR-39488-298 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39488-298 Gene

Function for piR-39488-298 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39488-298 Gene

Localization for piR-39488-298 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39488-298 Gene

Pathways & Interactions for piR-39488-298 Gene

PathCards logo

SuperPathways for piR-39488-298 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39488-298 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39488-298 Gene

Drugs & Compounds for piR-39488-298 Gene

No Compound Related Data Available

Transcripts for piR-39488-298 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39488-298 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039BE8C_9606 piRNA 30 1

ENA: DQ577286.1:1..30:ncRNA,

URS00001F18A7_9606 piRNA 26 1

ENA: DQ575296.1:1..26:ncRNA,

URS00005D71A4_9606 piRNA 26 1

ENA: DQ601422.1:1..26:ncRNA,

piR-39488-298 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39488-298 Gene

No ASD Table

Relevant External Links for piR-39488-298 Gene

GeneLoc Exon Structure for
piR-39488-298

No data available for mRNA/cDNA for piR-39488-298 Gene

Expression for piR-39488-298 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39488-298 Gene

Orthologs for piR-39488-298 Gene

No data available for Orthologs and Evolution for piR-39488-298 Gene

Paralogs for piR-39488-298 Gene

No data available for Paralogs for piR-39488-298 Gene

Variants for piR-39488-298 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39488-298 Gene

Disorders for piR-39488-298 Gene

No disorders were found for piR-39488-298 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39488-298 Gene

Publications for piR-39488-298 Gene

No publications were found for piR-39488-298 Gene.

No data available for Mastermind for piR-39488-298 Gene

Products for piR-39488-298 Gene

Sources for piR-39488-298 Gene