Aliases for piR-39488-278 Gene

Subcategory (RNA class) for piR-39488-278 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39488-278 Gene

No data available for External Ids for piR-39488-278 Gene

Summaries for piR-39488-278 Gene

GeneCards Summary for piR-39488-278 Gene

piR-39488-278 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39488-278 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39488-278 Gene

Genomics for piR-39488-278 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39488-278 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J105879 Enhancer 1 FANTOM5 ENCODE 0.3 -25.9 -25948 0.9 BACH1 IKZF2 TRIM22 DPF2 RELB RUNX3 GATAD2B TCF12 ARNT NBN PRDM1 ENSG00000284999 LOC105377923 piR-39488-278 PREP
GH06J105871 Enhancer 0.8 FANTOM5 ENCODE 0.4 -18.2 -18155 1 TCF7L2 CEBPB RCOR1 JUND EP300 STAT1 STAT3 ZNF384 MAFK SP1 PRDM1 piR-39488-278 ENSG00000284999 LOC105377923 PREP
GH06J105859 Enhancer 0.7 FANTOM5 Ensembl 0.4 -5.4 -5369 0.6 ZNF316 MAFK MAFF EMSY PRDM1 piR-39488-278 ENSG00000284999 LOC105377923 PREP
GH06J105869 Enhancer 0.7 FANTOM5 ENCODE 0.4 -15.8 -15834 0.4 TEAD4 YY1 BACH1 POU5F1 MAFK JUND PRDM1 piR-39488-278 ENSG00000284999 LOC105377923 PREP
GH06J105887 Enhancer 0.6 FANTOM5 0.3 -33.4 -33421 0.2 TCF12 DPF2 RUNX3 GATAD2B IKZF1 EBF1 TBX21 MTA2 BHLHE40 IKZF2 PRDM1 ENSG00000284999 LOC105377923 piR-39488-278 PREP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39488-278 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39488-278 Gene

Genomic Locations for piR-39488-278 Gene
chr6:105,854,303-105,854,332
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-39488-278 Gene

Genes around piR-39488-278 on UCSC Golden Path with GeneCards custom track
piR-39488-278 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39488-278 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39488-278 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39488-278 Gene

Proteins for piR-39488-278 Gene

Post-translational modifications for piR-39488-278 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39488-278 Gene

Domains & Families for piR-39488-278 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39488-278 Gene

Function for piR-39488-278 Gene

Phenotypes From GWAS Catalog for piR-39488-278 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39488-278 Gene

Localization for piR-39488-278 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39488-278 Gene

Pathways & Interactions for piR-39488-278 Gene

PathCards logo

SuperPathways for piR-39488-278 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39488-278 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39488-278 Gene

Drugs & Compounds for piR-39488-278 Gene

No Compound Related Data Available

Transcripts for piR-39488-278 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39488-278 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039BE8C_9606 piRNA 30 1

ENA: DQ577286.1:1..30:ncRNA,

URS00005D71A4_9606 piRNA 26 1

ENA: DQ601422.1:1..26:ncRNA,

piR-39488-278 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39488-278 Gene

No ASD Table

Relevant External Links for piR-39488-278 Gene

GeneLoc Exon Structure for
piR-39488-278

No data available for mRNA/cDNA for piR-39488-278 Gene

Expression for piR-39488-278 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39488-278 Gene

Orthologs for piR-39488-278 Gene

No data available for Orthologs and Evolution for piR-39488-278 Gene

Paralogs for piR-39488-278 Gene

No data available for Paralogs for piR-39488-278 Gene

Variants for piR-39488-278 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39488-278 Gene

Disorders for piR-39488-278 Gene

No disorders were found for piR-39488-278 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39488-278 Gene

Publications for piR-39488-278 Gene

No publications were found for piR-39488-278 Gene.

No data available for Mastermind for piR-39488-278 Gene

Products for piR-39488-278 Gene

Sources for piR-39488-278 Gene