Aliases for piR-39488-142 Gene

Subcategory (RNA class) for piR-39488-142 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39488-142 Gene

  • PiR-39488 161

No data available for External Ids for piR-39488-142 Gene

Summaries for piR-39488-142 Gene

GeneCards Summary for piR-39488-142 Gene

piR-39488-142 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39488-142 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39488-142 Gene

Genomics for piR-39488-142 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39488-142 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J018005 Promoter/Enhancer 0.8 Ensembl dbSUPER 600.7 +0.4 399 1.4 ZBTB33 KDM1A CBFA2T3 MLLT1 ZNF121 NONHSAG025114.2 piR-31162-231 piR-39488-142 piR-55650-322 piR-45471-294 piR-45504-251 piR-55655-265 piR-56022-248 piR-43099-287 piR-56088-011
GH19J018004 Enhancer 0.3 Ensembl 600.7 +1.4 1399 0.2 ZBTB33 ZNF121 piR-31162-231 piR-39488-142 piR-55650-322 piR-45471-294 piR-45504-251 piR-55655-265 piR-56022-248 piR-43099-287 piR-56088-011 piR-46662-326
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39488-142 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39488-142 Gene

Genomic Locations for piR-39488-142 Gene
chr19:18,006,075-18,006,100
(GRCh38/hg38)
Size:
26 bases
Orientation:
Minus strand

Genomic View for piR-39488-142 Gene

Genes around piR-39488-142 on UCSC Golden Path with GeneCards custom track
piR-39488-142 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39488-142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39488-142 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39488-142 Gene

Proteins for piR-39488-142 Gene

Post-translational modifications for piR-39488-142 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39488-142 Gene

Domains & Families for piR-39488-142 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39488-142 Gene

Function for piR-39488-142 Gene

Phenotypes From GWAS Catalog for piR-39488-142 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39488-142 Gene

Localization for piR-39488-142 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39488-142 Gene

Pathways & Interactions for piR-39488-142 Gene

PathCards logo

SuperPathways for piR-39488-142 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39488-142 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39488-142 Gene

Drugs & Compounds for piR-39488-142 Gene

No Compound Related Data Available

Transcripts for piR-39488-142 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39488-142 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005D71A4_9606 piRNA 26 1

ENA: DQ601422.1:1..26:ncRNA,

piR-39488-142 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39488-142 Gene

No ASD Table

Relevant External Links for piR-39488-142 Gene

GeneLoc Exon Structure for
piR-39488-142

No data available for mRNA/cDNA for piR-39488-142 Gene

Expression for piR-39488-142 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39488-142 Gene

Orthologs for piR-39488-142 Gene

No data available for Orthologs and Evolution for piR-39488-142 Gene

Paralogs for piR-39488-142 Gene

No data available for Paralogs for piR-39488-142 Gene

Variants for piR-39488-142 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39488-142 Gene

Disorders for piR-39488-142 Gene

No disorders were found for piR-39488-142 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39488-142 Gene

Publications for piR-39488-142 Gene

No publications were found for piR-39488-142 Gene.

No data available for Mastermind for piR-39488-142 Gene

Products for piR-39488-142 Gene

Sources for piR-39488-142 Gene