Aliases for piR-39488-027 Gene

Subcategory (RNA class) for piR-39488-027 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39488-027 Gene

No data available for External Ids for piR-39488-027 Gene

Summaries for piR-39488-027 Gene

GeneCards Summary for piR-39488-027 Gene

piR-39488-027 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39488-027 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39488-027 Gene

Genomics for piR-39488-027 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39488-027 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J179040 Enhancer 0.8 dbSUPER 600.7 +0.9 939 0.4 ARHGAP35 LEF1 IKZF1 MTA2 BRD9 ZNF24 DPF2 TCF12 MGA NKRF piR-39488-027 piR-53562-031 TOR3A RPS26P16 FAM20B
GH01J179041 Enhancer 0.3 Ensembl 600.7 -0.8 -765 0.6 IKZF1 PRDM1 piR-39488-027 piR-53562-031 FAM20B RF00998-009 TOR3A
GH01J179036 Enhancer 0.7 ENCODE 0.7 +3.9 3914 1.1 JUND PKNOX1 IKZF2 SOX6 RELB RUNX3 BCLAF1 ZBTB17 BCL11A NBN ENSG00000232750 RPS26P16 lnc-ABL2-2 TOR3A piR-39488-027 FAM20B
GH01J179038 Enhancer 0.6 ENCODE 0.7 +2.1 2145 1.2 PRDM1 ZNF24 ZNF600 SOX6 ZNF140 E2F5 CEBPG RCOR1 HDAC2 CEBPB CEP350 TOR3A FAM20B RPS26P16 piR-39488-027
GH01J179037 Enhancer 0.6 ENCODE 0.7 +3.2 3155 0.2 SOX6 E2F5 FOXM1 BHLHE40 NR2F1 NR2F6 TCF12 IKZF1 TEAD4 CBFA2T2 RPS26P16 piR-39488-027 FAM20B TOR3A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39488-027 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39488-027 Gene

Genomic Locations for piR-39488-027 Gene
chr1:179,041,102-179,041,136
(GRCh38/hg38)
Size:
35 bases
Orientation:
Minus strand

Genomic View for piR-39488-027 Gene

Genes around piR-39488-027 on UCSC Golden Path with GeneCards custom track
piR-39488-027 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39488-027 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39488-027 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39488-027 Gene

Proteins for piR-39488-027 Gene

Post-translational modifications for piR-39488-027 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39488-027 Gene

Domains & Families for piR-39488-027 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39488-027 Gene

Function for piR-39488-027 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39488-027 Gene

Localization for piR-39488-027 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39488-027 Gene

Pathways & Interactions for piR-39488-027 Gene

PathCards logo

SuperPathways for piR-39488-027 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39488-027 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39488-027 Gene

Drugs & Compounds for piR-39488-027 Gene

No Compound Related Data Available

Transcripts for piR-39488-027 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39488-027 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039BE8C_9606 piRNA 30 1

ENA: DQ577286.1:1..30:ncRNA,

URS00001F18A7_9606 piRNA 26 1

ENA: DQ575296.1:1..26:ncRNA,

URS00005D71A4_9606 piRNA 26 1

ENA: DQ601422.1:1..26:ncRNA,

piR-39488-027 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39488-027 Gene

No ASD Table

Relevant External Links for piR-39488-027 Gene

GeneLoc Exon Structure for
piR-39488-027

No data available for mRNA/cDNA for piR-39488-027 Gene

Expression for piR-39488-027 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39488-027 Gene

Orthologs for piR-39488-027 Gene

No data available for Orthologs and Evolution for piR-39488-027 Gene

Paralogs for piR-39488-027 Gene

No data available for Paralogs for piR-39488-027 Gene

Variants for piR-39488-027 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39488-027 Gene

Disorders for piR-39488-027 Gene

No disorders were found for piR-39488-027 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39488-027 Gene

Publications for piR-39488-027 Gene

No publications were found for piR-39488-027 Gene.

No data available for Mastermind for piR-39488-027 Gene

Products for piR-39488-027 Gene

Sources for piR-39488-027 Gene