Aliases for piR-39485 Gene

Subcategory (RNA class) for piR-39485 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39485 Gene

  • PiR-39485 161

No data available for External Ids for piR-39485 Gene

Summaries for piR-39485 Gene

GeneCards Summary for piR-39485 Gene

piR-39485 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39485 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39485 Gene

Genomics for piR-39485 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39485 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J179807 Enhancer 0.9 Ensembl ENCODE 600.7 +1.8 1767 1.7 HDAC1 EP300 HMBOX1 CEBPB NFE2 HES1 HDAC2 NR2C2 FOS FOSL1 piR-39485 FAM163A ENSG00000261831 TDRD5 piR-53069 TOR1AIP2
GH01J179808 Enhancer 0.2 Ensembl 600.7 +0.7 697 0.2 piR-39485 piR-53069 TOR1AIP2 FAM163A
GH01J179809 Enhancer 0.8 Ensembl ENCODE 0.7 +3.6 3599 0.8 CREB1 CTCF ZNF143 PKNOX1 REST RAD21 ZNF501 TRIM22 ZNF444 SMC3 ENSG00000261831 piR-39485 piR-53069 TOR1AIP2 FAM163A
GH01J179810 Enhancer 0.2 ENCODE 0.7 +2.7 2686 0.2 piR-39485 piR-53069 TOR1AIP2 FAM163A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39485 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39485 Gene

Genomic Locations for piR-39485 Gene
chr1:179,806,404-179,806,429
(GRCh38/hg38)
Size:
26 bases
Orientation:
Plus strand

Genomic View for piR-39485 Gene

Genes around piR-39485 on UCSC Golden Path with GeneCards custom track
piR-39485 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39485 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39485 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39485 Gene

Proteins for piR-39485 Gene

Post-translational modifications for piR-39485 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39485 Gene

Domains & Families for piR-39485 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39485 Gene

Function for piR-39485 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39485 Gene

Localization for piR-39485 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39485 Gene

Pathways & Interactions for piR-39485 Gene

PathCards logo

SuperPathways for piR-39485 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39485 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39485 Gene

Drugs & Compounds for piR-39485 Gene

No Compound Related Data Available

Transcripts for piR-39485 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39485 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000301F7B_9606 piRNA 26 1

ENA: DQ601419.1:1..27:ncRNA,

piR-39485 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39485 Gene

No ASD Table

Relevant External Links for piR-39485 Gene

GeneLoc Exon Structure for
piR-39485

No data available for mRNA/cDNA for piR-39485 Gene

Expression for piR-39485 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39485 Gene

Orthologs for piR-39485 Gene

No data available for Orthologs and Evolution for piR-39485 Gene

Paralogs for piR-39485 Gene

No data available for Paralogs for piR-39485 Gene

Variants for piR-39485 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39485 Gene

Disorders for piR-39485 Gene

No disorders were found for piR-39485 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39485 Gene

Publications for piR-39485 Gene

No publications were found for piR-39485 Gene.

No data available for Mastermind for piR-39485 Gene

Products for piR-39485 Gene

Sources for piR-39485 Gene