Aliases for piR-39401-021 Gene

Subcategory (RNA class) for piR-39401-021 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39401-021 Gene

No data available for External Ids for piR-39401-021 Gene

Summaries for piR-39401-021 Gene

GeneCards Summary for piR-39401-021 Gene

piR-39401-021 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39401-021 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39401-021 Gene

Genomics for piR-39401-021 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39401-021 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J167501 Enhancer 0.2 Ensembl 600.7 -1.3 -1283 2.4 piR-39401-021 piR-56186-044 SERPINI2 WDR49
GH03J167520 Enhancer 0.7 FANTOM5 Ensembl 0.4 +17.7 17716 2.8 CEBPA CEBPB EP300 POLR2A EGR1 SERPINI2 WDR49 piR-39401-021 piR-43676-021
GH03J167507 Enhancer 0.3 Ensembl 0.7 +4.7 4717 0.8 SPI1 ZBBX SERPINI2 piR-39401-021 piR-43676-021 WDR49
GH03J167525 Enhancer 0.4 FANTOM5 0.4 +22.2 22215 0.3 PRDM1 FOXA1 piR-39401-021 SERPINI2 piR-43676-021 WDR49
GH03J167574 Enhancer 0.5 Ensembl 0.2 +71.7 71717 1.6 ZIC2 POLR2A EZH2 OSR2 ZBTB17 HIC1 MAFK GLIS1 TRIM28 piR-43676-021 piR-39401-021 WDR49 SERPINI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39401-021 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39401-021 Gene

Genomic Locations for piR-39401-021 Gene
chr3:167,503,484-167,503,521
(GRCh38/hg38)
Size:
38 bases
Orientation:
Plus strand

Genomic View for piR-39401-021 Gene

Genes around piR-39401-021 on UCSC Golden Path with GeneCards custom track
piR-39401-021 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39401-021 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39401-021 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39401-021 Gene

Proteins for piR-39401-021 Gene

Post-translational modifications for piR-39401-021 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39401-021 Gene

Domains & Families for piR-39401-021 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39401-021 Gene

Function for piR-39401-021 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39401-021 Gene

Localization for piR-39401-021 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39401-021 Gene

Pathways & Interactions for piR-39401-021 Gene

PathCards logo

SuperPathways for piR-39401-021 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39401-021 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39401-021 Gene

Drugs & Compounds for piR-39401-021 Gene

No Compound Related Data Available

Transcripts for piR-39401-021 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39401-021 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000175943_9606 piRNA 30 1

ENA: DQ581288.1:1..30:ncRNA,

URS000019C5A6_9606 piRNA 29 1

ENA: DQ601335.1:1..29:ncRNA,

piR-39401-021 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39401-021 Gene

No ASD Table

Relevant External Links for piR-39401-021 Gene

GeneLoc Exon Structure for
piR-39401-021

No data available for mRNA/cDNA for piR-39401-021 Gene

Expression for piR-39401-021 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39401-021 Gene

Orthologs for piR-39401-021 Gene

No data available for Orthologs and Evolution for piR-39401-021 Gene

Paralogs for piR-39401-021 Gene

No data available for Paralogs for piR-39401-021 Gene

Variants for piR-39401-021 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39401-021 Gene

Disorders for piR-39401-021 Gene

No disorders were found for piR-39401-021 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39401-021 Gene

Publications for piR-39401-021 Gene

No publications were found for piR-39401-021 Gene.

No data available for Mastermind for piR-39401-021 Gene

Products for piR-39401-021 Gene

Sources for piR-39401-021 Gene