Aliases for piR-39341-085 Gene

Subcategory (RNA class) for piR-39341-085 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39341-085 Gene

  • PiR-39341 161

No data available for External Ids for piR-39341-085 Gene

Summaries for piR-39341-085 Gene

GeneCards Summary for piR-39341-085 Gene

piR-39341-085 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39341-085 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39341-085 Gene

Genomics for piR-39341-085 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39341-085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054879 Enhancer 0.9 Ensembl 0.4 -5.9 -5869 4.2 ZNF629 ZNF740 ZNF501 SOX6 EP300 ZNF140 MGA ZNF766 ZXDB CEBPB HNRNPA1 DNAJC14 PHC1P1 TMEM198B ENSG00000258344 CBX5 ENSG00000257509 GDF11 SCAT2 SARNP
GH12J054854 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 0.3 -32.8 -32806 0.7 CTCF ZNF143 REST RAD21 TRIM22 YY1 ZNF444 SMC3 ZNF217 GATA3 MUCL1 ENSG00000250654 HSALNG0091391 piR-39341-085 TESPA1
GH12J054857 Enhancer 0.6 FANTOM5 Ensembl 0.3 -28.5 -28469 3 SPI1 BATF IKZF1 GPR84 TESPA1 ZNF385A ITGA5 NCKAP1L MUCL1 HSALNG0091391 piR-39341-085
GH12J054863 Enhancer 0.4 Ensembl 0.4 -22.6 -22569 0.4 ZNF316 MAFK EMSY NEUROD4 piR-39341-085 HSALNG0091391 MUCL1 TESPA1
GH12J054847 Enhancer 0.4 Ensembl 0.3 -39.9 -39869 2.2 CEBPA CEBPB CEBPG ZNF385A MUCL1 HSALNG0091391 piR-39341-085 TESPA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39341-085 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39341-085 Gene

Genomic Locations for piR-39341-085 Gene
chr12:54,886,970-54,886,996
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand

Genomic View for piR-39341-085 Gene

Genes around piR-39341-085 on UCSC Golden Path with GeneCards custom track
piR-39341-085 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39341-085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39341-085 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39341-085 Gene

Proteins for piR-39341-085 Gene

Post-translational modifications for piR-39341-085 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39341-085 Gene

Domains & Families for piR-39341-085 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39341-085 Gene

Function for piR-39341-085 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39341-085 Gene

Localization for piR-39341-085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39341-085 Gene

Pathways & Interactions for piR-39341-085 Gene

PathCards logo

SuperPathways for piR-39341-085 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39341-085 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39341-085 Gene

Drugs & Compounds for piR-39341-085 Gene

No Compound Related Data Available

Transcripts for piR-39341-085 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39341-085 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000538D34_9606 piRNA 27 1

ENA: DQ601275.1:1..27:ncRNA,

piR-39341-085 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39341-085 Gene

No ASD Table

Relevant External Links for piR-39341-085 Gene

GeneLoc Exon Structure for
piR-39341-085

No data available for mRNA/cDNA for piR-39341-085 Gene

Expression for piR-39341-085 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39341-085 Gene

Orthologs for piR-39341-085 Gene

No data available for Orthologs and Evolution for piR-39341-085 Gene

Paralogs for piR-39341-085 Gene

No data available for Paralogs for piR-39341-085 Gene

Variants for piR-39341-085 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39341-085 Gene

Disorders for piR-39341-085 Gene

No disorders were found for piR-39341-085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39341-085 Gene

Publications for piR-39341-085 Gene

No publications were found for piR-39341-085 Gene.

No data available for Mastermind for piR-39341-085 Gene

Products for piR-39341-085 Gene

Sources for piR-39341-085 Gene