Aliases for piR-39300-085 Gene

Subcategory (RNA class) for piR-39300-085 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39300-085 Gene

  • PiR-39300 161

No data available for External Ids for piR-39300-085 Gene

Summaries for piR-39300-085 Gene

GeneCards Summary for piR-39300-085 Gene

piR-39300-085 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39300-085 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39300-085 Gene

Genomics for piR-39300-085 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39300-085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J032290 Enhancer 0.8 Ensembl ENCODE 600.7 +0.0 48 2.6 RELA RUNX3 ZNF157 ELF1 ZNF189 JUNB EBF1 ATF3 ATF2 ATF7 piR-39300-085 piR-50357-122 MTMR12 MIR579 ZFR RF00017-4557 GOLPH3
GH05J032297 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.5 -10491 14.5 RFX1 LEF1 IKZF1 KDM1A ZNF692 PRDM1 ZSCAN4 PKNOX1 SP1 BRD9 MTMR12 DROSHA MIR579 ZFR GOLPH3 RNU6-378P RF00026-856 piR-39300-085 RF00017-4557
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39300-085 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39300-085 Gene

Genomic Locations for piR-39300-085 Gene
chr5:32,291,722-32,291,748
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand

Genomic View for piR-39300-085 Gene

Genes around piR-39300-085 on UCSC Golden Path with GeneCards custom track
piR-39300-085 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39300-085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39300-085 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39300-085 Gene

Proteins for piR-39300-085 Gene

Post-translational modifications for piR-39300-085 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39300-085 Gene

Domains & Families for piR-39300-085 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39300-085 Gene

Function for piR-39300-085 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39300-085 Gene

Localization for piR-39300-085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39300-085 Gene

Pathways & Interactions for piR-39300-085 Gene

PathCards logo

SuperPathways for piR-39300-085 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39300-085 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39300-085 Gene

Drugs & Compounds for piR-39300-085 Gene

No Compound Related Data Available

Transcripts for piR-39300-085 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39300-085 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000027984D_9606 piRNA 27 1

ENA: DQ601234.1:1..27:ncRNA,

piR-39300-085 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39300-085 Gene

No ASD Table

Relevant External Links for piR-39300-085 Gene

GeneLoc Exon Structure for
piR-39300-085

No data available for mRNA/cDNA for piR-39300-085 Gene

Expression for piR-39300-085 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39300-085 Gene

Orthologs for piR-39300-085 Gene

No data available for Orthologs and Evolution for piR-39300-085 Gene

Paralogs for piR-39300-085 Gene

No data available for Paralogs for piR-39300-085 Gene

Variants for piR-39300-085 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39300-085 Gene

Disorders for piR-39300-085 Gene

No disorders were found for piR-39300-085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39300-085 Gene

Publications for piR-39300-085 Gene

No publications were found for piR-39300-085 Gene.

No data available for Mastermind for piR-39300-085 Gene

Products for piR-39300-085 Gene

Sources for piR-39300-085 Gene