Aliases for piR-39300-041 Gene

Subcategory (RNA class) for piR-39300-041 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39300-041 Gene

  • PiR-39300 161

No data available for External Ids for piR-39300-041 Gene

Summaries for piR-39300-041 Gene

GeneCards Summary for piR-39300-041 Gene

piR-39300-041 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39300-041 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39300-041 Gene

Genomics for piR-39300-041 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39300-041 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J086661 Enhancer 0.9 Ensembl ENCODE 0.2 -94.8 -94799 2.5 REST CEBPB FOXA1 SP1 JUND ATF3 TSHZ1 FOS CHD2 JUN piR-60885-028 piR-39300-041 ENSG00000258185 MGAT4C NTS
GH12J086613 Enhancer 0.5 Ensembl 0.3 -47.6 -47554 0.2 CEBPB JUN JUND EP300 PRDM1 SPI1 STAT3 piR-39300-041 piR-60885-028 ENSG00000258185 MGAT4C NTS
GH12J086635 Enhancer 0.4 Ensembl 0.2 -68.9 -68854 0.8 FOS JUN JUND FOSL2 piR-60885-028 piR-39300-041 ENSG00000258185 MGAT4C NTS
GH12J086601 Enhancer 0.2 FANTOM5 0.3 -35.4 -35423 0.2 piR-39300-041 piR-60885-028 ENSG00000258185 MGAT4C NTS
GH12J086614 Enhancer 0.2 Ensembl 0.3 -48.2 -48153 0.2 piR-39300-041 piR-60885-028 MGAT4C ENSG00000258185 NTS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39300-041 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39300-041 Gene

Genomic Locations for piR-39300-041 Gene
chr12:86,565,921-86,565,947
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand

Genomic View for piR-39300-041 Gene

Genes around piR-39300-041 on UCSC Golden Path with GeneCards custom track
piR-39300-041 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39300-041 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39300-041 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39300-041 Gene

Proteins for piR-39300-041 Gene

Post-translational modifications for piR-39300-041 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39300-041 Gene

Domains & Families for piR-39300-041 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39300-041 Gene

Function for piR-39300-041 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39300-041 Gene

Localization for piR-39300-041 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39300-041 Gene

Pathways & Interactions for piR-39300-041 Gene

PathCards logo

SuperPathways for piR-39300-041 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39300-041 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39300-041 Gene

Drugs & Compounds for piR-39300-041 Gene

No Compound Related Data Available

Transcripts for piR-39300-041 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39300-041 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000027984D_9606 piRNA 27 1

ENA: DQ601234.1:1..27:ncRNA,

piR-39300-041 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39300-041 Gene

No ASD Table

Relevant External Links for piR-39300-041 Gene

GeneLoc Exon Structure for
piR-39300-041

No data available for mRNA/cDNA for piR-39300-041 Gene

Expression for piR-39300-041 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39300-041 Gene

Orthologs for piR-39300-041 Gene

No data available for Orthologs and Evolution for piR-39300-041 Gene

Paralogs for piR-39300-041 Gene

No data available for Paralogs for piR-39300-041 Gene

Variants for piR-39300-041 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39300-041 Gene

Disorders for piR-39300-041 Gene

No disorders were found for piR-39300-041 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39300-041 Gene

Publications for piR-39300-041 Gene

No publications were found for piR-39300-041 Gene.

No data available for Mastermind for piR-39300-041 Gene

Products for piR-39300-041 Gene

Sources for piR-39300-041 Gene