piR-39082-012 Gene (RNA Gene)

 

GC09M108394
GIFtS:
2
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Aliases for piR-39082-012 Gene

Subcategory (RNA class) for piR-39082-012 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39082-012 Gene

No data available for External Ids for piR-39082-012 Gene

Summaries for piR-39082-012 Gene

GeneCards Summary for piR-39082-012 Gene

piR-39082-012 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39082-012 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39082-012 Gene

Genomics for piR-39082-012 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-39082-012 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J108387 Enhancer 0.6 Ensembl ENCODE 0.4 +7.1 7119 0.9 JUND FOS POLR2A piR-39082-012 piR-31938-013 LOC105376214 lnc-ACTL7B-11 ACTL7B KLF4
GH09J108396 Enhancer 0.3 ENCODE 0.7 -2.4 -2445 1.1 CEBPG ATF4 piR-39082-012 FJ601684-465 lnc-ACTL7B-11 LOC105376214 ACTL7B KLF4
GH09J108377 Enhancer 0.4 Ensembl ENCODE 0.4 +16.6 16640 0.2 CTBP1 piR-31938-013 piR-39082-012 lnc-ACTL7B-11 LOC105376214 ACTL7B KLF4
GH09J108382 Enhancer 0.2 ENCODE 0.4 +11.7 11710 0.2 piR-39082-012 piR-31938-013 lnc-ACTL7B-11 LOC105376214 ACTL7B KLF4
GH09J108374 Enhancer 0.2 Ensembl 0.4 +19.4 19366 0.8 piR-31938-013 piR-39082-012 lnc-ACTL7B-11 LOC105376214 ACTL7B KLF4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39082-012 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39082-012 Gene

Genomic Locations for piR-39082-012 Gene
chr9:108,394,136-108,394,166
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand

Genomic View for piR-39082-012 Gene

Genes around piR-39082-012 on UCSC Golden Path with GeneCards custom track
piR-39082-012 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39082-012 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39082-012 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39082-012 Gene

Proteins for piR-39082-012 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-39082-012 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39082-012 Gene

Domains & Families for piR-39082-012 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39082-012 Gene

Function for piR-39082-012 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39082-012 Gene

Localization for piR-39082-012 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39082-012 Gene

Pathways & Interactions for piR-39082-012 Gene

PathCards logo

SuperPathways for piR-39082-012 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39082-012 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39082-012 Gene

Drugs & Compounds for piR-39082-012 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-39082-012 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39082-012 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005A0DFD_9606 piRNA 31 1

ENA: DQ601017.1:1..31:ncRNA,

URS00001B5B09_9606 piRNA 29 1

ENA: DQ601016.1:1..29:ncRNA,

piR-39082-012 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39082-012 Gene

No ASD Table

Relevant External Links for piR-39082-012 Gene

GeneLoc Exon Structure for
piR-39082-012

No data available for mRNA/cDNA for piR-39082-012 Gene

Expression for piR-39082-012 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39082-012 Gene

Orthologs for piR-39082-012 Gene

No data available for Orthologs and Evolution for piR-39082-012 Gene

Paralogs for piR-39082-012 Gene

No data available for Paralogs for piR-39082-012 Gene

Variants for piR-39082-012 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39082-012 Gene

Disorders for piR-39082-012 Gene

No disorders were found for piR-39082-012 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39082-012 Gene

Publications for piR-39082-012 Gene

No publications were found for piR-39082-012 Gene.

No data available for Mastermind for piR-39082-012 Gene

Products for piR-39082-012 Gene

Sources for piR-39082-012 Gene