piR-38553 Gene (RNA Gene)

 

GC12M026973
GIFtS:
3
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Aliases for piR-38553 Gene

Subcategory (RNA class) for piR-38553 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-38553 Gene

  • PiR-38553 161

No data available for External Ids for piR-38553 Gene

Summaries for piR-38553 Gene

GeneCards Summary for piR-38553 Gene

piR-38553 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-38553 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-38553 Gene

Genomics for piR-38553 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-38553 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J026972 Enhancer 0.9 Ensembl ENCODE 600.7 -0.4 -353 2 BACH1 ZNF143 RELA IKZF2 RCOR1 TRIM22 SCRT2 SIN3A DPF2 RELB ENSG00000247903 piR-38553 TM7SF3 lnc-INTS13-1 FGFR1OP2
GH12J026935 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +32.0 31953 8.3 BRCA1 ARHGAP35 SP1 PRDM10 ZNF629 IKZF1 NFKBIZ ZNF692 POLR2A ZNF7 FGFR1OP2 INTS13 ENSG00000247903 TM7SF3 MED21 ITPR2 piR-38553
GH12J026952 Enhancer 0.8 ENCODE dbSUPER 0.4 +17.8 17818 1.1 GTF2E2 NR2C2 ZNF18 ATF4 BHLHE40 CEBPB CEBPG ATF3 RXRA ZBTB33 ENSG00000247903 ITPR2 piR-38553 FGFR1OP2 TM7SF3
GH12J026963 Enhancer 0.5 dbSUPER 0.4 +6.9 6935 1.8 CEBPB CEBPG ATF4 ATF3 HLF ZNF133 TM7SF3 ENSG00000247903 piR-38553 FGFR1OP2
GH12J026968 Enhancer 0.3 Ensembl 0.7 +2.0 2047 0.4 PAF1 piR-38553 FGFR1OP2 TM7SF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-38553 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-38553 Gene

Genomic Locations for piR-38553 Gene
chr12:26,971,223-26,971,248
(GRCh38/hg38)
Size:
26 bases
Orientation:
Minus strand

Genomic View for piR-38553 Gene

Genes around piR-38553 on UCSC Golden Path with GeneCards custom track
piR-38553 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-38553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-38553 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-38553 Gene

Proteins for piR-38553 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-38553 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-38553 Gene

Domains & Families for piR-38553 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-38553 Gene

Function for piR-38553 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-38553 Gene

Localization for piR-38553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-38553 Gene

Pathways & Interactions for piR-38553 Gene

PathCards logo

SuperPathways for piR-38553 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-38553 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-38553 Gene

Drugs & Compounds for piR-38553 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-38553 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-38553 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003418EA_9606 piRNA 26 1

ENA: DQ600487.1:1..26:ncRNA,

piR-38553 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-38553 Gene

No ASD Table

Relevant External Links for piR-38553 Gene

GeneLoc Exon Structure for
piR-38553

No data available for mRNA/cDNA for piR-38553 Gene

Expression for piR-38553 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-38553 Gene

Orthologs for piR-38553 Gene

No data available for Orthologs and Evolution for piR-38553 Gene

Paralogs for piR-38553 Gene

No data available for Paralogs for piR-38553 Gene

Variants for piR-38553 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-38553 Gene

Disorders for piR-38553 Gene

No disorders were found for piR-38553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-38553 Gene

Publications for piR-38553 Gene

No publications were found for piR-38553 Gene.

No data available for Mastermind for piR-38553 Gene

Products for piR-38553 Gene

Sources for piR-38553 Gene