Aliases for lnc-ZNF236-3 Gene

Data sources for lnc-ZNF236-3 Gene:

Subcategory (RNA class) for lnc-ZNF236-3 Gene

lncRNA

Aliases for lnc-ZNF236-3 Gene

No data available for External Ids for lnc-ZNF236-3 Gene

Summaries for lnc-ZNF236-3 Gene

GeneCards Summary for lnc-ZNF236-3 Gene

lnc-ZNF236-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-ZNF236-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-ZNF236-3 Gene

Genomics for lnc-ZNF236-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-ZNF236-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076803 Enhancer 0.8 ENCODE 250.7 -0.8 -806 0.8 CTCF MAX TRIM22 EBF1 SMC3 RAD21 YY1 SMARCA5 MLLT1 ZFP37 ENSG00000278107 lnc-ZNF236-3 ZNF236 RNU6-346P ZNF236-DT ZNF516
GH18J076805 Enhancer 0.7 Ensembl ENCODE 250.7 +1.3 1252 1.9 CEBPA CTCF JUND SOX5 BHLHE40 ZNF3 JUN FOS SOX13 CREB1 ENSG00000278107 lnc-ZNF236-3 ZNF236 HSALNG0122595 ZNF236-DT ZNF516
GH18J076802 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.7 -2.6 -2609 0.6 ZBTB10 FEZF1 CTCF REST TRIM22 SMAD4 SAP130 ZNF341 SMC3 GABPB1 RNU6-346P RF00026-496 ZNF236 lnc-ZNF236-3 ZNF236-DT ZNF516
GH18J076801 Promoter 0.7 CraniofacialAtlas 0.7 -3.1 -3131 0.2 ZBTB10 SAFB CTCF GLIS2 ZNF777 GATAD2B ZBTB20 ZBTB26 RNU6-346P RF00026-496 piR-50444-206 lnc-ZNF236-3 ZNF236 ZNF236-DT ZNF516
GH18J076811 Enhancer 0.7 Ensembl 0.4 +6.8 6825 0.2 NR2C1 ZNF395 REST SPI1 ELF1 IKZF1 TCF7 NR2F1 ESRRA ZNF217 ZNF236 ENSG00000278107 HSALNG0122595 lnc-ZNF236-3 ZNF236-DT ZNF516
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-ZNF236-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-ZNF236-3 Gene

Latest Assembly
chr18:76,804,876-76,814,720
(GRCh38/hg38)
Size:
9,845 bases
Orientation:
Plus strand

Genomic View for lnc-ZNF236-3 Gene

Genes around lnc-ZNF236-3 on UCSC Golden Path with GeneCards custom track
lnc-ZNF236-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-ZNF236-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-ZNF236-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-ZNF236-3 Gene

Proteins for lnc-ZNF236-3 Gene

Post-translational modifications for lnc-ZNF236-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-ZNF236-3 Gene

Domains & Families for lnc-ZNF236-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-ZNF236-3 Gene

Function for lnc-ZNF236-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-ZNF236-3 Gene

Localization for lnc-ZNF236-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-ZNF236-3 Gene

Pathways & Interactions for lnc-ZNF236-3 Gene

PathCards logo

SuperPathways for lnc-ZNF236-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-ZNF236-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-ZNF236-3 Gene

Drugs & Compounds for lnc-ZNF236-3 Gene

No Compound Related Data Available

Transcripts for lnc-ZNF236-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-ZNF236-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BCA54_9606 lncRNA 2455 2

LNCipedia: lnc-ZNF236-3:1,

NONCODE: NONHSAT059955.2,

URS0001BD196B_9606 lncRNA 7244 1

LncBook: HSALNT0253437,

URS0001BF6943_9606 lncRNA 6653 1

LncBook: HSALNT0253435,

URS0001BF2969_9606 lncRNA 6430 1

LncBook: HSALNT0253434,

URS0001BE8F12_9606 lncRNA 5175 1

LncBook: HSALNT0253433,

lnc-ZNF236-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-ZNF236-3 Gene

No ASD Table

Relevant External Links for lnc-ZNF236-3 Gene

GeneLoc Exon Structure for
lnc-ZNF236-3

No data available for mRNA/cDNA for lnc-ZNF236-3 Gene

Expression for lnc-ZNF236-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-ZNF236-3 Gene

Orthologs for lnc-ZNF236-3 Gene

No data available for Orthologs and Evolution for lnc-ZNF236-3 Gene

Paralogs for lnc-ZNF236-3 Gene

No data available for Paralogs for lnc-ZNF236-3 Gene

Variants for lnc-ZNF236-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-ZNF236-3 Gene

Disorders for lnc-ZNF236-3 Gene

No disorders were found for lnc-ZNF236-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-ZNF236-3 Gene

Publications for lnc-ZNF236-3 Gene

No publications were found for lnc-ZNF236-3 Gene.

No data available for Mastermind for lnc-ZNF236-3 Gene

Products for lnc-ZNF236-3 Gene

Sources for lnc-ZNF236-3 Gene