Aliases for lnc-ZBTB16-1 Gene

Data sources for lnc-ZBTB16-1 Gene:

Subcategory (RNA class) for lnc-ZBTB16-1 Gene

lncRNA

Aliases for lnc-ZBTB16-1 Gene

No data available for External Ids for lnc-ZBTB16-1 Gene

Summaries for lnc-ZBTB16-1 Gene

GeneCards Summary for lnc-ZBTB16-1 Gene

lnc-ZBTB16-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-ZBTB16-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-ZBTB16-1 Gene

Genomics for lnc-ZBTB16-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-ZBTB16-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J114306 Enhancer 1 ENCODE dbSUPER 250.7 +1.5 1462 3 MNT IKZF1 CEBPB ZNF623 VEZF1 RUNX1 SAP130 RXRA FOXA2 ZBTB33 lnc-ZBTB16-1 NNMT HSALNG0087297 NONHSAG009661.2 ENSG00000256947 RBM7
GH11J114304 Enhancer 0.5 dbSUPER 250.7 -1.9 -1895 1.2 FOXA2 POLR2A JUND FOXP1 HNF4A SP1 lnc-ZBTB16-1 NNMT C11orf71 ENSG00000255663 RBM7 NONHSAG009661.2 HSALNG0087297 ENSG00000256947
GH11J114310 Enhancer 0.5 Ensembl dbSUPER 0.7 +4.0 3993 0.2 SMARCE1 HMBOX1 HSALNG0087297 lnc-ZBTB16-1 NONHSAG009661.2 ENSG00000256947 NNMT RBM7
GH11J114312 Enhancer 0.4 Ensembl dbSUPER 0.7 +4.6 4593 0.2 ZBTB33 HSALNG0087297 lnc-ZBTB16-1 NONHSAG009661.2 ENSG00000256947 NNMT RBM7
GH11J114311 Enhancer 0.3 dbSUPER 0.4 +5.7 5729 1.3 ZBTB33 HLF HSALNG0087297 NNMT lnc-ZBTB16-1 NONHSAG009661.2 HSALNG0087299 ENSG00000256947 RBM7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-ZBTB16-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-ZBTB16-1 Gene

Latest Assembly
chr11:114,306,708-114,309,729
(GRCh38/hg38)
Size:
3,022 bases
Orientation:
Plus strand

Genomic View for lnc-ZBTB16-1 Gene

Genes around lnc-ZBTB16-1 on UCSC Golden Path with GeneCards custom track
lnc-ZBTB16-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-ZBTB16-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-ZBTB16-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-ZBTB16-1 Gene

Proteins for lnc-ZBTB16-1 Gene

Post-translational modifications for lnc-ZBTB16-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-ZBTB16-1 Gene

Domains & Families for lnc-ZBTB16-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-ZBTB16-1 Gene

Function for lnc-ZBTB16-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-ZBTB16-1 Gene

Localization for lnc-ZBTB16-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-ZBTB16-1 Gene

Pathways & Interactions for lnc-ZBTB16-1 Gene

PathCards logo

SuperPathways for lnc-ZBTB16-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-ZBTB16-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-ZBTB16-1 Gene

Drugs & Compounds for lnc-ZBTB16-1 Gene

No Compound Related Data Available

Transcripts for lnc-ZBTB16-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-ZBTB16-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B7F93_9606 lncRNA 3021 2

LNCipedia: lnc-ZBTB16-1:1,

NONCODE: NONHSAT024276.2,

URS0001BCE4C1_9606 lncRNA 3021 1

LncBook: HSALNT0181378,

lnc-ZBTB16-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-ZBTB16-1 Gene

No ASD Table

Relevant External Links for lnc-ZBTB16-1 Gene

GeneLoc Exon Structure for
lnc-ZBTB16-1

No data available for mRNA/cDNA for lnc-ZBTB16-1 Gene

Expression for lnc-ZBTB16-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-ZBTB16-1 Gene

Orthologs for lnc-ZBTB16-1 Gene

No data available for Orthologs and Evolution for lnc-ZBTB16-1 Gene

Paralogs for lnc-ZBTB16-1 Gene

No data available for Paralogs for lnc-ZBTB16-1 Gene

Variants for lnc-ZBTB16-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-ZBTB16-1 Gene

Disorders for lnc-ZBTB16-1 Gene

No disorders were found for lnc-ZBTB16-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-ZBTB16-1 Gene

Publications for lnc-ZBTB16-1 Gene

No publications were found for lnc-ZBTB16-1 Gene.

No data available for Mastermind for lnc-ZBTB16-1 Gene

Products for lnc-ZBTB16-1 Gene

Sources for lnc-ZBTB16-1 Gene