Aliases for lnc-XKR7-1 Gene

Subcategory (RNA class) for lnc-XKR7-1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-XKR7-1 Gene

  • NONHSAG031589.2 91
  • Lnc-XKR7-1 165

No data available for External Ids for lnc-XKR7-1 Gene

Summaries for lnc-XKR7-1 Gene

GeneCards Summary for lnc-XKR7-1 Gene

lnc-XKR7-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-XKR7-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-XKR7-1 Gene

Genomics for lnc-XKR7-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-XKR7-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J032006 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +8.7 8662 2.1 ZNF629 ZIC2 PKNOX1 POLR2A SP1 GABPA ZNF600 ZNF341 ZNF23 USF1 RNA5SP481 KIF3B CCM2L COX4I2 lnc-XKR7-1 ENSG00000226239 XKR7
GH20J031994 Enhancer 0.6 ENCODE 0.7 -3.7 -3692 0.7 CTCF KDM1A POLR2A EZH2 NRF1 RAD21 FOXA2 YY1 MYC SIN3A lnc-XKR7-1 CCM2L ENSG00000278012 XKR7
GH20J032005 Enhancer 0.8 ENCODE dbSUPER 0.4 +6.1 6066 0.2 SIX5 ZNF143 MTA1 ZBTB17 ZNF217 HCFC1 POLR2A CREM ATF4 ZFP91 RNA5SP481 CCM2L lnc-XKR7-1 XKR7
GH20J031974 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -23.7 -23735 2.1 KDM1A POLR2A USF1 YY1 ZFHX2 BCOR ADNP SIN3A SMARCA4 ZMYM3 XKR7 PDRG1 RNA5SP481 CCM2L RNU1-94P MYLK2 TM9SF4 TTLL9 ENSG00000278012 lnc-XKR7-1
GH20J031987 Enhancer 0.8 Ensembl dbSUPER 0.4 -11.1 -11137 0.6 SP1 NR3C1 NR2F2 NFIC FOSL2 HNF4A ZNF3 RARA NFIA NFE2 CCM2L RNA5SP481 MYLK2 TM9SF4 TTLL9 lnc-XKR7-1 ENSG00000278012 XKR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-XKR7-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-XKR7-1 Gene

Genomic Locations for lnc-XKR7-1 Gene
chr20:31,999,047-32,003,387
(GRCh38/hg38)
Size:
4,341 bases
Orientation:
Plus strand

Genomic View for lnc-XKR7-1 Gene

Genes around lnc-XKR7-1 on UCSC Golden Path with GeneCards custom track
lnc-XKR7-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-XKR7-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-XKR7-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-XKR7-1 Gene

Proteins for lnc-XKR7-1 Gene

Post-translational modifications for lnc-XKR7-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-XKR7-1 Gene

Domains & Families for lnc-XKR7-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-XKR7-1 Gene

Function for lnc-XKR7-1 Gene

Phenotypes From GWAS Catalog for lnc-XKR7-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-XKR7-1 Gene

Localization for lnc-XKR7-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-XKR7-1 Gene

Pathways & Interactions for lnc-XKR7-1 Gene

PathCards logo

SuperPathways for lnc-XKR7-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-XKR7-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-XKR7-1 Gene

Drugs & Compounds for lnc-XKR7-1 Gene

No Compound Related Data Available

Transcripts for lnc-XKR7-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-XKR7-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B2820_9606 lncRNA 4341 2

LNCipedia: lnc-XKR7-1:1,

NONCODE: NONHSAT079329.2,

URS00008BDB26_9606 lncRNA 3107 1

LNCipedia: lnc-XKR7-1:2,

lnc-XKR7-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-XKR7-1 Gene

No ASD Table

Relevant External Links for lnc-XKR7-1 Gene

GeneLoc Exon Structure for
lnc-XKR7-1

No data available for mRNA/cDNA for lnc-XKR7-1 Gene

Expression for lnc-XKR7-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-XKR7-1 Gene

Orthologs for lnc-XKR7-1 Gene

No data available for Orthologs and Evolution for lnc-XKR7-1 Gene

Paralogs for lnc-XKR7-1 Gene

No data available for Paralogs for lnc-XKR7-1 Gene

Variants for lnc-XKR7-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-XKR7-1 Gene

Disorders for lnc-XKR7-1 Gene

No disorders were found for lnc-XKR7-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-XKR7-1 Gene

Publications for lnc-XKR7-1 Gene

No publications were found for lnc-XKR7-1 Gene.

No data available for Mastermind for lnc-XKR7-1 Gene

Products for lnc-XKR7-1 Gene

Sources for lnc-XKR7-1 Gene