lnc-UBE2O-1 Gene (RNA Gene)

 

GC17M076386
GIFtS:
4
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Aliases for lnc-UBE2O-1 Gene

Data sources for lnc-UBE2O-1 Gene:

Subcategory (RNA class) for lnc-UBE2O-1 Gene

lncRNA

Aliases for lnc-UBE2O-1 Gene

No data available for External Ids for lnc-UBE2O-1 Gene

Summaries for lnc-UBE2O-1 Gene

GeneCards Summary for lnc-UBE2O-1 Gene

lnc-UBE2O-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-UBE2O-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-UBE2O-1 Gene

Genomics for lnc-UBE2O-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-UBE2O-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J076388 Enhancer 0.9 Ensembl ENCODE 250.7 -2.0 -1991 2 SIN3A ZNF511 KMT2B GABPB1 RBM22 CTCF SUPT5H RBPJ ZNF48 ZNF362 lnc-UBE2O-1 QRICH2 UBE2O AANAT EXOC7 FOXJ1 HSALNG0118830 PRPSAP1
GH17J076387 Promoter/Enhancer 0.8 Ensembl dbSUPER 250.7 +0.3 284 0.2 RBM22 HNRNPL TARDBP POLR2A RBFOX2 lnc-UBE2O-1 PRPSAP1 SPHK1 UBE2O
GH17J076389 Enhancer 0.5 Ensembl 250.7 -0.7 -716 0.2 POLR2A ZNF547 ZNF664 PAF1 ZNF280D BCOR lnc-UBE2O-1 PRPSAP1 HSALNG0118830 UBE2O
GH17J076380 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.9 3909 6.7 ZSCAN16 TBP ZBTB10 MXD4 CEBPA MNT IKZF1 SMAD5 IRF2 HES1 SPHK1 PRPSAP1 UNK SRSF2 ENSG00000267342 ENSG00000266980 TRIM65 ENSG00000267546 SAP30BP METTL23
GH17J076393 Enhancer 0.4 dbSUPER 0.4 -6.3 -6293 1.1 RBM22 KLF1 FOS HSALNG0118830 QRICH2 AANAT UBE2O RNU6-24P EXOC7 SPHK1 lnc-UBE2O-1 PRPSAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-UBE2O-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-UBE2O-1 Gene

Latest Assembly
chr17:76,386,804-76,387,585
(GRCh38/hg38)
Size:
782 bases
Orientation:
Minus strand

Genomic View for lnc-UBE2O-1 Gene

Genes around lnc-UBE2O-1 on UCSC Golden Path with GeneCards custom track
lnc-UBE2O-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-UBE2O-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-UBE2O-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-UBE2O-1 Gene

Proteins for lnc-UBE2O-1 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for lnc-UBE2O-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-UBE2O-1 Gene

Domains & Families for lnc-UBE2O-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-UBE2O-1 Gene

Function for lnc-UBE2O-1 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-UBE2O-1 Gene

Localization for lnc-UBE2O-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-UBE2O-1 Gene

Pathways & Interactions for lnc-UBE2O-1 Gene

PathCards logo

SuperPathways for lnc-UBE2O-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-UBE2O-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-UBE2O-1 Gene

Drugs & Compounds for lnc-UBE2O-1 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for lnc-UBE2O-1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-UBE2O-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C2FC6_9606 lncRNA 782 3

LncBook: HSALNT0245399,

LNCipedia: lnc-UBE2O-1:1,

NONCODE: NONHSAT056011.2, NONHSAT056012.2,

lnc-UBE2O-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-UBE2O-1 Gene

No ASD Table

Relevant External Links for lnc-UBE2O-1 Gene

GeneLoc Exon Structure for
lnc-UBE2O-1

No data available for mRNA/cDNA for lnc-UBE2O-1 Gene

Expression for lnc-UBE2O-1 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-UBE2O-1 Gene

Orthologs for lnc-UBE2O-1 Gene

No data available for Orthologs and Evolution for lnc-UBE2O-1 Gene

Paralogs for lnc-UBE2O-1 Gene

No data available for Paralogs for lnc-UBE2O-1 Gene

Variants for lnc-UBE2O-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-UBE2O-1 Gene

Disorders for lnc-UBE2O-1 Gene

No disorders were found for lnc-UBE2O-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-UBE2O-1 Gene

Publications for lnc-UBE2O-1 Gene

No publications were found for lnc-UBE2O-1 Gene.

No data available for Mastermind for lnc-UBE2O-1 Gene

Products for lnc-UBE2O-1 Gene

Sources for lnc-UBE2O-1 Gene