Aliases for lnc-TNFRSF13B-3 Gene

Data sources for lnc-TNFRSF13B-3 Gene:

RNA type for lnc-TNFRSF13B-3 Gene

lncRNA

Aliases for lnc-TNFRSF13B-3 Gene

No data available for External Ids for lnc-TNFRSF13B-3 Gene

Summaries for lnc-TNFRSF13B-3 Gene

GeneCards Summary for lnc-TNFRSF13B-3 Gene

lnc-TNFRSF13B-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-TNFRSF13B-3 Gene



  • Search for lnc-TNFRSF13B-3 at DataMed
  • Search for lnc-TNFRSF13B-3 at HumanCyc

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-TNFRSF13B-3 Gene

Genomics for lnc-TNFRSF13B-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-TNFRSF13B-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J017040 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.6 -1572 6.1 BCLAF1 SP1 NCOR1 MYC ZNF600 IKZF1 JUND ZMYM3 ZNF223 ZIC2 MPRIP ENSG00000287910 piR-32428-001 lnc-TNFRSF13B-3 piR-52781 piR-47121-001 MPRIP-AS1 FLCN PIGL PLD6
GH17J017038 Enhancer 0.5 dbSUPER 0.7 +3.6 3582 0.7 CEBPA FOXA2 SMAD4 ZNF146 FOXP1 FOXA3 L13714-196 ENSG00000287910 MPRIP lnc-TNFRSF13B-3 ENSG00000287114 TNFRSF13B
GH17J017035 Enhancer 0.7 ENCODE dbSUPER 0.4 +5.8 5779 1.9 ZNF592 MNT SPI1 MYC MAX POLR2A L3MBTL2 MGA L13714-196 ENSG00000287114 ENSG00000287910 MPRIP lnc-TNFRSF13B-3 TNFRSF13B
GH17J017034 Enhancer 0.3 ENCODE dbSUPER 0.4 +8.1 8090 0.2 ENSG00000287114 ENSG00000287910 L13714-196 MPRIP lnc-TNFRSF13B-3 TNFRSF13B
GH17J017039 Enhancer 0.2 dbSUPER 0.7 +2.1 2054 0.8 L13714-196 FLCN ENSG00000287910 MPRIP lnc-TNFRSF13B-3 ENSG00000287114 TNFRSF13B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-TNFRSF13B-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-TNFRSF13B-3 Gene

Latest Assembly
chr17:17,033,010-17,042,292
(GRCh38/hg38)
Size:
9,283 bases
Orientation:
Minus strand

Genomic View for lnc-TNFRSF13B-3 Gene

Genes around lnc-TNFRSF13B-3 on UCSC Golden Path with GeneCards custom track
lnc-TNFRSF13B-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-TNFRSF13B-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-TNFRSF13B-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-TNFRSF13B-3 Gene

Proteins for lnc-TNFRSF13B-3 Gene

Post-translational modifications for lnc-TNFRSF13B-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-TNFRSF13B-3 Gene

Domains & Families for lnc-TNFRSF13B-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-TNFRSF13B-3 Gene

Function for lnc-TNFRSF13B-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-TNFRSF13B-3 Gene

Localization for lnc-TNFRSF13B-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-TNFRSF13B-3 Gene

Pathways & Interactions for lnc-TNFRSF13B-3 Gene

PathCards logo

SuperPathways for lnc-TNFRSF13B-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-TNFRSF13B-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-TNFRSF13B-3 Gene

Drugs & Compounds for lnc-TNFRSF13B-3 Gene

No Compound Related Data Available

Transcripts for lnc-TNFRSF13B-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-TNFRSF13B-3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000D5716F_9606 lncRNA 2106 2

LncBook: HSALNT0237958,

LNCipedia: lnc-TNFRSF13B-3:2,

URS0000D581A8_9606 lncRNA 914 2

LncBook: HSALNT0237963,

LNCipedia: lnc-TNFRSF13B-3:5,

URS0001BD4927_9606 lncRNA 2106 1

LncBook: HSALNT0237958,

URS0001BEA874_9606 lncRNA 967 1

LncBook: HSALNT0237961,

URS0001BD4F63_9606 lncRNA 948 1

LncBook: HSALNT0237959,

lnc-TNFRSF13B-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-TNFRSF13B-3 Gene

No ASD Table

Relevant External Links for lnc-TNFRSF13B-3 Gene

GeneLoc Exon Structure for
lnc-TNFRSF13B-3

No data available for mRNA/cDNA for lnc-TNFRSF13B-3 Gene

Expression for lnc-TNFRSF13B-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-TNFRSF13B-3 Gene

Orthologs for lnc-TNFRSF13B-3 Gene

No data available for Orthologs and Evolution for lnc-TNFRSF13B-3 Gene

Paralogs for lnc-TNFRSF13B-3 Gene

No data available for Paralogs for lnc-TNFRSF13B-3 Gene

Variants for lnc-TNFRSF13B-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-TNFRSF13B-3 Gene

Disorders for lnc-TNFRSF13B-3 Gene

No disorders were found for lnc-TNFRSF13B-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-TNFRSF13B-3 Gene

Publications for lnc-TNFRSF13B-3 Gene

No publications were found for lnc-TNFRSF13B-3 Gene.

No data available for Mastermind for lnc-TNFRSF13B-3 Gene

Products for lnc-TNFRSF13B-3 Gene

Sources for lnc-TNFRSF13B-3 Gene