Aliases for lnc-TMEM45B-2 Gene

Data sources for lnc-TMEM45B-2 Gene:

Subcategory (RNA class) for lnc-TMEM45B-2 Gene

lncRNA

Aliases for lnc-TMEM45B-2 Gene

No data available for External Ids for lnc-TMEM45B-2 Gene

Summaries for lnc-TMEM45B-2 Gene

GeneCards Summary for lnc-TMEM45B-2 Gene

lnc-TMEM45B-2 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-TMEM45B-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-TMEM45B-2 Gene

Genomics for lnc-TMEM45B-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-TMEM45B-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J129696 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 250.7 +1.5 1462 0.5 ZNF217 CTCF REST ZNF341 GABPB1 RAD21 CTBP1 SMC3 ZBTB48 ZNF189 lnc-TMEM45B-2 BARX2 HSALNG0088171 HSALNG0088167-002 TMEM45B ENSG00000287426
GH11J129695 Promoter/Enhancer 0.8 ENCODE CraniofacialAtlas 250.7 +1.1 1054 0.3 CTCF ZIC2 RAD21 ZNF143 TFDP1 ZNF335 lnc-TMEM45B-2 BARX2 HSALNG0088171 HSALNG0088167-002 ENSG00000287426 TMEM45B
GH11J129698 Enhancer 0.4 Ensembl 0.7 +3.9 3884 0.6 SPI1 MYC MAX APLP2 lnc-TMEM45B-2 HSALNG0088171 HSALNG0088167-002 TMEM45B ENSG00000287426 BARX2
GH11J129687 Enhancer 0.5 ENCODE 0.4 -7.2 -7246 0.2 FOXA1 DPF2 NCOA3 MEIS2 CREB1 EP300 ATF7 ZNF579 GATAD2B NONHSAG010034.2 lnc-TMEM45B-2 HSALNG0088167-002 TMEM45B ENSG00000287426 BARX2
GH11J129703 Enhancer 0.5 Ensembl 0.4 +9.4 9384 2 CEBPB RXRA ATF2 GATA2 HNF4A HSALNG0088171 lnc-TMEM45B-2 HSALNG0088167-002 ENSG00000287426 TMEM45B BARX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-TMEM45B-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-TMEM45B-2 Gene

Latest Assembly
chr11:129,694,617-129,698,245
(GRCh38/hg38)
Size:
3,629 bases
Orientation:
Plus strand

Genomic View for lnc-TMEM45B-2 Gene

Genes around lnc-TMEM45B-2 on UCSC Golden Path with GeneCards custom track
lnc-TMEM45B-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-TMEM45B-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-TMEM45B-2 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-TMEM45B-2 Gene

Proteins for lnc-TMEM45B-2 Gene

Post-translational modifications for lnc-TMEM45B-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-TMEM45B-2 Gene

Domains & Families for lnc-TMEM45B-2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-TMEM45B-2 Gene

Function for lnc-TMEM45B-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-TMEM45B-2 Gene

Localization for lnc-TMEM45B-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-TMEM45B-2 Gene

Pathways & Interactions for lnc-TMEM45B-2 Gene

PathCards logo

SuperPathways for lnc-TMEM45B-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-TMEM45B-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-TMEM45B-2 Gene

Drugs & Compounds for lnc-TMEM45B-2 Gene

No Compound Related Data Available

Transcripts for lnc-TMEM45B-2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-TMEM45B-2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BAB1D_9606 lncRNA 3628 2

LNCipedia: lnc-TMEM45B-2:1,

NONCODE: NONHSAT025096.2,

lnc-TMEM45B-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-TMEM45B-2 Gene

No ASD Table

Relevant External Links for lnc-TMEM45B-2 Gene

GeneLoc Exon Structure for
lnc-TMEM45B-2

No data available for mRNA/cDNA for lnc-TMEM45B-2 Gene

Expression for lnc-TMEM45B-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-TMEM45B-2 Gene

Orthologs for lnc-TMEM45B-2 Gene

No data available for Orthologs and Evolution for lnc-TMEM45B-2 Gene

Paralogs for lnc-TMEM45B-2 Gene

No data available for Paralogs for lnc-TMEM45B-2 Gene

Variants for lnc-TMEM45B-2 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-TMEM45B-2 Gene

Disorders for lnc-TMEM45B-2 Gene

No disorders were found for lnc-TMEM45B-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-TMEM45B-2 Gene

Publications for lnc-TMEM45B-2 Gene

No publications were found for lnc-TMEM45B-2 Gene.

No data available for Mastermind for lnc-TMEM45B-2 Gene

Products for lnc-TMEM45B-2 Gene

Sources for lnc-TMEM45B-2 Gene