Aliases for lnc-TM2D1-3 Gene

Data sources for lnc-TM2D1-3 Gene:

Subcategory (RNA class) for lnc-TM2D1-3 Gene


Aliases for lnc-TM2D1-3 Gene

No data available for External Ids for lnc-TM2D1-3 Gene

Summaries for lnc-TM2D1-3 Gene

GeneCards Summary for lnc-TM2D1-3 Gene

lnc-TM2D1-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-TM2D1-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-TM2D1-3 Gene

Genomics for lnc-TM2D1-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-TM2D1-3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J061669 Enhancer 0.5 Ensembl 250.7 -1.4 -1350 2.2 SPI1 POLR2A CEBPB ZNF366 ZNF512 lnc-TM2D1-3 TM2D1 RNU6-414P RNU6-1177P NFIA-AS2 MK280144-016 NFIA
GH01J061667 Enhancer 0.2 Ensembl 250.7 +0.8 750 0.4 lnc-TM2D1-3 RNU6-414P RNU6-1177P NFIA-AS2 TM2D1 MGC34796 NFIA
GH01J061692 Enhancer 0.8 Ensembl 0.3 -23.8 -23849 0.8 FEZF1 ZEB1 ZNF639 KLF7 ZNF843 JUND ZNF624 ZNF2 ZSCAN23 ZFP37 USP1 TM2D1 RNU6-414P RNU6-1177P MK280144-016 lnc-TM2D1-3 lnc-KANK4-7 NFIA
GH01J061709 Enhancer 0.8 Ensembl 0.3 -41.1 -41050 1.2 IKZF1 HES1 ARNT VEZF1 NBN ZEB2 TAL1 MYNN ZNF316 FOSL1 RNU6-1177P TM2D1 MK280144-016 lnc-KANK4-7 lnc-TM2D1-3 NFIA
GH01J061681 Enhancer 0.3 ENCODE 0.4 -14.2 -14210 3.2 SCRT1 ZNF133 RNU6-1177P TM2D1 lnc-TM2D1-3 MK280144-016 lnc-KANK4-7 NFIA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-TM2D1-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-TM2D1-3 Gene

Latest Assembly
676 bases
Minus strand

Genomic View for lnc-TM2D1-3 Gene

Genes around lnc-TM2D1-3 on UCSC Golden Path with GeneCards custom track
lnc-TM2D1-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-TM2D1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-TM2D1-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-TM2D1-3 Gene

Proteins for lnc-TM2D1-3 Gene

Post-translational modifications for lnc-TM2D1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-TM2D1-3 Gene

Domains & Families for lnc-TM2D1-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-TM2D1-3 Gene

Function for lnc-TM2D1-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-TM2D1-3 Gene

Localization for lnc-TM2D1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-TM2D1-3 Gene

Pathways & Interactions for lnc-TM2D1-3 Gene

PathCards logo

SuperPathways for lnc-TM2D1-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-TM2D1-3 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-TM2D1-3 Gene

Drugs & Compounds for lnc-TM2D1-3 Gene

No Compound Related Data Available

Transcripts for lnc-TM2D1-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-TM2D1-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BE13E_9606 lncRNA 676 2

LNCipedia: lnc-TM2D1-3:1,


URS0001BED176_9606 lncRNA 675 1

LncBook: HSALNT0007960,

lnc-TM2D1-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-TM2D1-3 Gene

No ASD Table

Relevant External Links for lnc-TM2D1-3 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for lnc-TM2D1-3 Gene

Expression for lnc-TM2D1-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-TM2D1-3 Gene

Orthologs for lnc-TM2D1-3 Gene

No data available for Orthologs and Evolution for lnc-TM2D1-3 Gene

Paralogs for lnc-TM2D1-3 Gene

No data available for Paralogs for lnc-TM2D1-3 Gene

Variants for lnc-TM2D1-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-TM2D1-3 Gene

Disorders for lnc-TM2D1-3 Gene

No disorders were found for lnc-TM2D1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-TM2D1-3 Gene

Publications for lnc-TM2D1-3 Gene

No publications were found for lnc-TM2D1-3 Gene.

No data available for Mastermind for lnc-TM2D1-3 Gene

Products for lnc-TM2D1-3 Gene

Sources for lnc-TM2D1-3 Gene