Aliases for lnc-TEX2-2 Gene

Data sources for lnc-TEX2-2 Gene:

RNA type for lnc-TEX2-2 Gene

lncRNA

Aliases for lnc-TEX2-2 Gene

No data available for External Ids for lnc-TEX2-2 Gene

Summaries for lnc-TEX2-2 Gene

GeneCards Summary for lnc-TEX2-2 Gene

lnc-TEX2-2 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-TEX2-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-TEX2-2 Gene

Genomics for lnc-TEX2-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-TEX2-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064330 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 250.7 -1.5 -1522 2.5 MYC NCOR1 IKZF1 ZNF592 CEBPA NFIC CEBPB MBD2 MAX EP300 HSALNG0118091 lnc-TEX2-2 piR-51671-042 PECAM1 LRRC37A3 ERN1 DDX5 ICAM2 RF00017-2253 TEX2
GH17J064326 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.7 +2.7 2680 4.8 IKZF1 SSRP1 ZMYM3 CEBPA YY1 CEBPB ELK1 HOMEZ EP300 SMAD4 PECAM1 ERN1 DDX5 lnc-TEX2-2 piR-51671-042 RF00017-2253 TEX2
GH17J064321 Enhancer 1 ENCODE dbSUPER 0.4 +9.3 9327 1.3 ZNF654 IKZF1 ZNF592 CEBPA CTCF CEBPB REST TRIM22 FOXA2 RAD21 RF00017-2253 TEX2 lnc-TEX2-2 RPL31P57 HSALNG0118086 PECAM1
GH17J064324 Enhancer 0.6 ENCODE dbSUPER 0.4 +6.6 6553 0.2 MAX NR2F1 IKZF1 IKZF2 MTA2 GATAD2B RF00017-2253 lnc-TEX2-2 piR-51671-042 HSALNG0118086 TEX2 PECAM1
GH17J064323 Enhancer 0.6 ENCODE dbSUPER 0.4 +6.8 6813 0.2 MAX NR2F1 PKNOX1 IKZF2 MTA2 RF00017-2253 lnc-TEX2-2 piR-51671-042 HSALNG0118086 TEX2 PECAM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-TEX2-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-TEX2-2 Gene

Latest Assembly
chr17:64,319,091-64,330,649
(GRCh38/hg38)
Size:
11,559 bases
Orientation:
Minus strand

Genomic View for lnc-TEX2-2 Gene

Genes around lnc-TEX2-2 on UCSC Golden Path with GeneCards custom track
lnc-TEX2-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-TEX2-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-TEX2-2 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-TEX2-2 Gene

Proteins for lnc-TEX2-2 Gene

Post-translational modifications for lnc-TEX2-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-TEX2-2 Gene

Domains & Families for lnc-TEX2-2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-TEX2-2 Gene

Function for lnc-TEX2-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-TEX2-2 Gene

Localization for lnc-TEX2-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-TEX2-2 Gene

Pathways & Interactions for lnc-TEX2-2 Gene

PathCards logo

SuperPathways for lnc-TEX2-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-TEX2-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-TEX2-2 Gene

Drugs & Compounds for lnc-TEX2-2 Gene

No Compound Related Data Available

Transcripts for lnc-TEX2-2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-TEX2-2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BDE3D_9606 lncRNA 1343 2

LNCipedia: lnc-TEX2-2:1,

NONCODE: NONHSAT055277.2,

URS00009B5A01_9606 lncRNA 941 2

LncBook: HSALNT0243828,

NONCODE: NONHSAT176459.1,

URS0001BF4DF4_9606 lncRNA 5357 1

LncBook: HSALNT0243806,

URS0001BE1333_9606 lncRNA 5077 1

LncBook: HSALNT0243819,

URS0001BD5FD5_9606 lncRNA 4835 1

LncBook: HSALNT0243808,

lnc-TEX2-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-TEX2-2 Gene

No ASD Table

Relevant External Links for lnc-TEX2-2 Gene

GeneLoc Exon Structure for
lnc-TEX2-2

No data available for mRNA/cDNA for lnc-TEX2-2 Gene

Expression for lnc-TEX2-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-TEX2-2 Gene

Orthologs for lnc-TEX2-2 Gene

No data available for Orthologs and Evolution for lnc-TEX2-2 Gene

Paralogs for lnc-TEX2-2 Gene

No data available for Paralogs for lnc-TEX2-2 Gene

Variants for lnc-TEX2-2 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-TEX2-2 Gene

Disorders for lnc-TEX2-2 Gene

No disorders were found for lnc-TEX2-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-TEX2-2 Gene

Publications for lnc-TEX2-2 Gene

No publications were found for lnc-TEX2-2 Gene.

No data available for Mastermind for lnc-TEX2-2 Gene

Products for lnc-TEX2-2 Gene

Sources for lnc-TEX2-2 Gene