Aliases for lnc-TDP1-3 Gene

Subcategory (RNA class) for lnc-TDP1-3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for lnc-TDP1-3 Gene

  • NONHSAG015681 92
  • Lnc-TDP1-3 168
  • RF00100 172

No data available for External Ids for lnc-TDP1-3 Gene

Summaries for lnc-TDP1-3 Gene

GeneCards Summary for lnc-TDP1-3 Gene

lnc-TDP1-3 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for lnc-TDP1-3 Gene

Additional gene information for lnc-TDP1-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for lnc-TDP1-3 Gene

Genomics for lnc-TDP1-3 Gene

GeneHancer (GH) Regulatory Elements for lnc-TDP1-3 Gene

Promoters and enhancers for lnc-TDP1-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J089700 Promoter/Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas 0.4 -10.4 -10417 2.4 HNRNPK TCF12 MYC USF1 SP1 ZNF10 GABPA ZBTB26 TRIM28 SAP30 FOXN3 TDP1 RN7SKP255 lnc-TDP1-3 ENSG00000252655 ENSG00000259053
GH14J089718 Enhancer 0.9 FANTOM5 ENCODE 0.4 +8.5 8502 4.4 RFX1 ATF2 TCF12 CREB1 CTCF SPI1 GABPA EBF1 RAD21 MAX FOXN3 ENSG00000252655 RN7SKP107 TDP1 RN7SKP255 lnc-TDP1-3 CHORDC2P ENSG00000259053
GH14J089723 Enhancer 0.6 ENCODE CraniofacialAtlas 0.4 +12.2 12178 1.5 FOXA2 SPI1 RXRA HNF4A FOXA1 SP1 RN7SKP107 FOXN3 ENSG00000252655 RN7SKP255 lnc-TDP1-3 CHORDC2P ENSG00000259053
GH14J089680 Enhancer 0.8 ENCODE 0.3 -30.8 -30823 1.8 SP1 EP300 MEF2C RCOR1 BCL11A RELA CBFB ARNT MEF2B SPI1 ENSG00000252655 RN7SKP107 FOXN3 EML5 RN7SKP255 lnc-TDP1-3 ENSG00000259053
GH14J089672 Enhancer 0.7 Ensembl ENCODE 0.3 -39.2 -39211 2.2 TBX3 FOXA2 NFIC GATA3 FOXA1 ZGPAT BCL6 NFIB HHEX HMG20A ENSG00000252655 lnc-TDP1-3 RN7SKP255 ENSG00000259053
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-TDP1-3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-TDP1-3 Gene

Genomic Locations for lnc-TDP1-3 Gene
chr14:89,712,511-89,712,823
(GRCh38/hg38)
Size:
313 bases
Orientation:
Plus strand

Genomic View for lnc-TDP1-3 Gene

Genes around lnc-TDP1-3 on UCSC Golden Path with GeneCards custom track

lnc-TDP1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-TDP1-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-TDP1-3 Gene

Proteins for lnc-TDP1-3 Gene

Post-translational modifications for lnc-TDP1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-TDP1-3 Gene

Domains & Families for lnc-TDP1-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-TDP1-3 Gene

Function for lnc-TDP1-3 Gene

miRNA for lnc-TDP1-3 Gene

miRTarBase miRNAs that target lnc-TDP1-3

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for lnc-TDP1-3 Gene

Localization for lnc-TDP1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-TDP1-3 Gene

Pathways & Interactions for lnc-TDP1-3 Gene

PathCards logo

SuperPathways for lnc-TDP1-3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for lnc-TDP1-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-TDP1-3 Gene

Drugs & Compounds for lnc-TDP1-3 Gene

No Compound Related Data Available

Transcripts for lnc-TDP1-3 Gene

mRNA/cDNA for lnc-TDP1-3 Gene

1 RNACentral transcripts :
1 NONCODE transcripts :
1 LNCipedia transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-TDP1-3 Gene

No ASD Table

Relevant External Links for lnc-TDP1-3 Gene

GeneLoc Exon Structure for
lnc-TDP1-3

Expression for lnc-TDP1-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-TDP1-3 Gene

Orthologs for lnc-TDP1-3 Gene

No data available for Orthologs and Evolution for lnc-TDP1-3 Gene

Paralogs for lnc-TDP1-3 Gene

No data available for Paralogs for lnc-TDP1-3 Gene

Variants for lnc-TDP1-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-TDP1-3 Gene

Disorders for lnc-TDP1-3 Gene

No disorders were found for lnc-TDP1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-TDP1-3 Gene

Publications for lnc-TDP1-3 Gene

No publications were found for lnc-TDP1-3 Gene.

No data available for Mastermind for lnc-TDP1-3 Gene

Products for lnc-TDP1-3 Gene

Sources for lnc-TDP1-3 Gene