Aliases for lnc-SORL1-3 Gene

Data sources for lnc-SORL1-3 Gene:

RNA type for lnc-SORL1-3 Gene

lncRNA

Aliases for lnc-SORL1-3 Gene

No data available for External Ids for lnc-SORL1-3 Gene

Summaries for lnc-SORL1-3 Gene

GeneCards Summary for lnc-SORL1-3 Gene

lnc-SORL1-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-SORL1-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-SORL1-3 Gene

Genomics for lnc-SORL1-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-SORL1-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J121405 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -2.9 -2886 3.6 ETS1 YY1 TAF1 EGR1 SP1 POU5F1 NANOG ZNF143 ENSG00000246790 SORL1 lnc-SORL1-3 HSALNG0087739 SC5D
GH11J121416 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +8.7 8679 2.7 BCLAF1 SP1 POLR2A ZIC2 YY1 BCL11A CTCF TRIM22 BHLHE40 ZNF341 SORL1 ENSG00000246790 BMPR1AP2 ENSG00000271022 lnc-SORL1-3 lnc-BLID-8 SC5D
GH11J121427 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 0.4 +17.9 17915 0.8 CTCF GABPB1 NRF1 IKZF1 RB1 RAD21 NR2F1 BACH1 STAT1 ZNF217 ENSG00000271022 lnc-BLID-8 SORL1 ENSG00000246790 lnc-SORL1-3 SC5D
GH11J121411 Enhancer 0.5 Ensembl 0.7 +2.5 2515 1.2 RXRA HNF4A RAD21 MAX SP1 SORL1 ENSG00000246790 lnc-SORL1-3 lnc-BLID-8 ENSG00000271022 SC5D
GH11J121422 Enhancer 0.7 FANTOM5 ENCODE 0.4 +13.4 13430 0.3 BHLHE40 BMI1 MTA3 ATF2 ZNF217 ZNF687 RAD51 SORL1 ENSG00000246790 ENSG00000271022 lnc-BLID-8 lnc-SORL1-3 SC5D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-SORL1-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-SORL1-3 Gene

Latest Assembly
chr11:121,409,486-121,409,713
(GRCh38/hg38)
Size:
228 bases
Orientation:
Plus strand

Genomic View for lnc-SORL1-3 Gene

Genes around lnc-SORL1-3 on UCSC Golden Path with GeneCards custom track
lnc-SORL1-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-SORL1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-SORL1-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-SORL1-3 Gene

Proteins for lnc-SORL1-3 Gene

Post-translational modifications for lnc-SORL1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-SORL1-3 Gene

Domains & Families for lnc-SORL1-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-SORL1-3 Gene

Function for lnc-SORL1-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-SORL1-3 Gene

Localization for lnc-SORL1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-SORL1-3 Gene

Pathways & Interactions for lnc-SORL1-3 Gene

PathCards logo

SuperPathways for lnc-SORL1-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-SORL1-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-SORL1-3 Gene

Drugs & Compounds for lnc-SORL1-3 Gene

No Compound Related Data Available

Transcripts for lnc-SORL1-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-SORL1-3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008B6958_9606 lncRNA 227 2

LNCipedia: lnc-SORL1-3:1,

NONCODE: NONHSAT024748.2,

URS0001BDC0A7_9606 lncRNA 227 1

LncBook: HSALNT0182278,

lnc-SORL1-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-SORL1-3 Gene

No ASD Table

Relevant External Links for lnc-SORL1-3 Gene

GeneLoc Exon Structure for
lnc-SORL1-3

No data available for mRNA/cDNA for lnc-SORL1-3 Gene

Expression for lnc-SORL1-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-SORL1-3 Gene

Orthologs for lnc-SORL1-3 Gene

No data available for Orthologs and Evolution for lnc-SORL1-3 Gene

Paralogs for lnc-SORL1-3 Gene

No data available for Paralogs for lnc-SORL1-3 Gene

Variants for lnc-SORL1-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-SORL1-3 Gene

Disorders for lnc-SORL1-3 Gene

No disorders were found for lnc-SORL1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-SORL1-3 Gene

Publications for lnc-SORL1-3 Gene

No publications were found for lnc-SORL1-3 Gene.

No data available for Mastermind for lnc-SORL1-3 Gene

Products for lnc-SORL1-3 Gene

Sources for lnc-SORL1-3 Gene