Aliases for lnc-SLC22A31-6 Gene

Data sources for lnc-SLC22A31-6 Gene:

Subcategory (RNA class) for lnc-SLC22A31-6 Gene

lncRNA

Aliases for lnc-SLC22A31-6 Gene

No data available for External Ids for lnc-SLC22A31-6 Gene

Summaries for lnc-SLC22A31-6 Gene

GeneCards Summary for lnc-SLC22A31-6 Gene

lnc-SLC22A31-6 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-SLC22A31-6 Gene


  • Search for lnc-SLC22A31-6 at DataMed
  • Search for lnc-SLC22A31-6 at HumanCyc

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-SLC22A31-6 Gene

Genomics for lnc-SLC22A31-6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-SLC22A31-6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J089201 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 250.7 -1.4 -1426 2 BHLHE40 NONO ZIC2 SIN3A VEZF1 SAP130 SP2 ZNF146 TBP SMARCE1 SLC22A31 ZNF778 lnc-SLC22A31-6 CDH15 LINC02138 CBFA2T3 ACSF3 TUBB3 ENSG00000259877
GH16J089200 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 250.7 0.0 -27 0.4 CHD2 CEBPA NR2C1 HOMEZ THAP11 SMAD4 SAP130 MIER3 ZSCAN9 ETV4 ZNF778 SLC22A31 lnc-SLC22A31-6 CDH15 LINC02138 CBFA2T3
GH16J089198 Enhancer 0.4 Ensembl dbSUPER 250.7 +1.5 1473 0.2 ZHX2 lnc-SLC22A31-6 SLC22A31 CDH15
GH16J089191 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 0.4 +8.1 8081 0.2 MXD4 ZFP64 BHLHE40 ELF1 NONO KDM6A ZNF740 SMAD4 SAP130 ZNF341 ACSF3 lnc-SLC22A31-6 SLC22A31 CDH15
GH16J089170 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +26.9 26886 5.7 ZBTB10 MXD4 SP1 MNT ZFP64 MBD2 BHLHE40 ZIC2 VEZF1 SAP130 CDH15 PABPN1L ACSF3 ENSG00000259877 LINC00304 LOC105371414 SLC22A31 SPATA33 lnc-SLC22A31-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-SLC22A31-6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-SLC22A31-6 Gene

Latest Assembly
chr16:89,195,760-89,200,374
(GRCh38/hg38)
Size:
4,615 bases
Orientation:
Minus strand

Genomic View for lnc-SLC22A31-6 Gene

Genes around lnc-SLC22A31-6 on UCSC Golden Path with GeneCards custom track
lnc-SLC22A31-6 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-SLC22A31-6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-SLC22A31-6 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-SLC22A31-6 Gene

Proteins for lnc-SLC22A31-6 Gene

Post-translational modifications for lnc-SLC22A31-6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-SLC22A31-6 Gene

Domains & Families for lnc-SLC22A31-6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-SLC22A31-6 Gene

Function for lnc-SLC22A31-6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-SLC22A31-6 Gene

Localization for lnc-SLC22A31-6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-SLC22A31-6 Gene

Pathways & Interactions for lnc-SLC22A31-6 Gene

PathCards logo

SuperPathways for lnc-SLC22A31-6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-SLC22A31-6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-SLC22A31-6 Gene

Drugs & Compounds for lnc-SLC22A31-6 Gene

No Compound Related Data Available

Transcripts for lnc-SLC22A31-6 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-SLC22A31-6 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009B90C0_9606 lncRNA 1103 3

LncBook: HSALNT0235428,

LNCipedia: lnc-SLC22A31-6:2,

NONCODE: NONHSAT144482.2,

URS00009B8953_9606 lncRNA 1074 3

LncBook: HSALNT0235425,

LNCipedia: lnc-SLC22A31-6:10,

NONCODE: NONHSAT144479.2,

URS00008BF2C9_9606 lncRNA 1044 3

LncBook: HSALNT0235427,

LNCipedia: lnc-SLC22A31-6:1,

NONCODE: NONHSAT144481.2,

URS00009BC7B9_9606 lncRNA 651 3

LncBook: HSALNT0235426,

LNCipedia: lnc-SLC22A31-6:6,

NONCODE: NONHSAT144480.2,

URS00009C2EB0_9606 lncRNA 1624 2

LNCipedia: lnc-SLC22A31-6:9,

NONCODE: NONHSAT144478.2,

lnc-SLC22A31-6 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-SLC22A31-6 Gene

No ASD Table

Relevant External Links for lnc-SLC22A31-6 Gene

GeneLoc Exon Structure for
lnc-SLC22A31-6

No data available for mRNA/cDNA for lnc-SLC22A31-6 Gene

Expression for lnc-SLC22A31-6 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-SLC22A31-6 Gene

Orthologs for lnc-SLC22A31-6 Gene

No data available for Orthologs and Evolution for lnc-SLC22A31-6 Gene

Paralogs for lnc-SLC22A31-6 Gene

No data available for Paralogs for lnc-SLC22A31-6 Gene

Variants for lnc-SLC22A31-6 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-SLC22A31-6 Gene

Disorders for lnc-SLC22A31-6 Gene

No disorders were found for lnc-SLC22A31-6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-SLC22A31-6 Gene

Publications for lnc-SLC22A31-6 Gene

No publications were found for lnc-SLC22A31-6 Gene.

No data available for Mastermind for lnc-SLC22A31-6 Gene

Products for lnc-SLC22A31-6 Gene

Sources for lnc-SLC22A31-6 Gene