lnc-SAP30-1-002 Gene (RNA Gene)

 

GC04P173358
GIFtS:
3
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Aliases for lnc-SAP30-1-002 Gene

Data sources for lnc-SAP30-1-002 Gene:

Subcategory (RNA class) for lnc-SAP30-1-002 Gene

lncRNA

Aliases for lnc-SAP30-1-002 Gene

No data available for External Ids for lnc-SAP30-1-002 Gene

Summaries for lnc-SAP30-1-002 Gene

GeneCards Summary for lnc-SAP30-1-002 Gene

lnc-SAP30-1-002 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-SAP30-1-002 Gene


  • Search for lnc-SAP30-1-002 at DataMed
  • Search for lnc-SAP30-1-002 at HumanCyc

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-SAP30-1-002 Gene

Genomics for lnc-SAP30-1-002 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-SAP30-1-002 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J173357 Enhancer 0.2 Ensembl 250.7 -0.2 -157 0.2 lnc-SAP30-1-002 lnc-SAP30-9 HMGB2 ENSG00000248774 SAP30 SAP30-DT lnc-HMGB2-6 LOC105377541 lnc-SAP30-1-001
GH04J173345 Enhancer 0.6 Ensembl ENCODE 0.4 -11.7 -11735 1.1 JUND ZNF24 SPI1 lnc-HMGB2-6 SCRG1 HMGB2 lnc-SAP30-1-001 lnc-SAP30-1-002 LOC105377541 SAP30 SAP30-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-SAP30-1-002 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-SAP30-1-002 Gene

Latest Assembly
chr4:173,358,058-173,358,780
(GRCh38/hg38)
Size:
723 bases
Orientation:
Plus strand

Genomic View for lnc-SAP30-1-002 Gene

Genes around lnc-SAP30-1-002 on UCSC Golden Path with GeneCards custom track
lnc-SAP30-1-002 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-SAP30-1-002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-SAP30-1-002 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-SAP30-1-002 Gene

Proteins for lnc-SAP30-1-002 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for lnc-SAP30-1-002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-SAP30-1-002 Gene

Domains & Families for lnc-SAP30-1-002 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-SAP30-1-002 Gene

Function for lnc-SAP30-1-002 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-SAP30-1-002 Gene

Localization for lnc-SAP30-1-002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-SAP30-1-002 Gene

Pathways & Interactions for lnc-SAP30-1-002 Gene

PathCards logo

SuperPathways for lnc-SAP30-1-002 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-SAP30-1-002 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-SAP30-1-002 Gene

Drugs & Compounds for lnc-SAP30-1-002 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for lnc-SAP30-1-002 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-SAP30-1-002 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BA9AC_9606 lncRNA 722 3

LncBook: HSALNT0080877,

LNCipedia: lnc-SAP30-1:3,

NONCODE: NONHSAT099238.2,

lnc-SAP30-1-002 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-SAP30-1-002 Gene

No ASD Table

Relevant External Links for lnc-SAP30-1-002 Gene

GeneLoc Exon Structure for
lnc-SAP30-1-002

No data available for mRNA/cDNA for lnc-SAP30-1-002 Gene

Expression for lnc-SAP30-1-002 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-SAP30-1-002 Gene

Orthologs for lnc-SAP30-1-002 Gene

No data available for Orthologs and Evolution for lnc-SAP30-1-002 Gene

Paralogs for lnc-SAP30-1-002 Gene

No data available for Paralogs for lnc-SAP30-1-002 Gene

Variants for lnc-SAP30-1-002 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-SAP30-1-002 Gene

Disorders for lnc-SAP30-1-002 Gene

No disorders were found for lnc-SAP30-1-002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-SAP30-1-002 Gene

Publications for lnc-SAP30-1-002 Gene

No publications were found for lnc-SAP30-1-002 Gene.

No data available for Mastermind for lnc-SAP30-1-002 Gene

Products for lnc-SAP30-1-002 Gene

Sources for lnc-SAP30-1-002 Gene