Aliases for lnc-RNF152-3 Gene

Data sources for lnc-RNF152-3 Gene:

RNA type for lnc-RNF152-3 Gene

lncRNA

Aliases for lnc-RNF152-3 Gene

No data available for External Ids for lnc-RNF152-3 Gene

Summaries for lnc-RNF152-3 Gene

GeneCards Summary for lnc-RNF152-3 Gene

lnc-RNF152-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-RNF152-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-RNF152-3 Gene

Genomics for lnc-RNF152-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-RNF152-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J061890 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 250.7 +1.1 1132 4.6 ZNF600 ZNF10 ZBTB10 ETS1 ZNF341 CTCF SIN3A KLF9 SP2 RXRA HSALNG0121953 LOC105372159 RNF152 lnc-RNF152-3 lnc-PIGN-6 CDH20
GH18J061882 Enhancer 0.6 Ensembl ENCODE 0.4 +11.5 11491 0.9 JUND GATA2 POLR2A CHD2 EP300 ENSG00000267038 lnc-RNF152-3 RNF152 lnc-PIGN-6 CDH20
GH18J061851 Enhancer 0.8 Ensembl ENCODE 0.3 +40.8 40819 4.3 JUND ATF2 SPI1 GATA2 JUN CREB1 POLR2A ATF3 ZNF629 NFE2L2 RNF152 lnc-PIGN-6 lnc-RNF152-3 CDH20
GH18J061869 Enhancer 0.5 FANTOM5 Ensembl ENCODE 0.4 +23.9 23867 1.4 RNF152 CDH20 PHLPP1 lnc-RNF152-3 lnc-PIGN-6
GH18J061831 Enhancer 0.7 Ensembl ENCODE 0.2 +61.6 61646 4.4 JUND SPI1 POLR2A RAD21 BHLHE40 MAX EP300 RNF152 RELCH lnc-PIGN-6 lnc-RNF152-3 CDH20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-RNF152-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-RNF152-3 Gene

Latest Assembly
chr18:61,875,004-61,894,247
(GRCh38/hg38)
Size:
19,244 bases
Orientation:
Minus strand

Genomic View for lnc-RNF152-3 Gene

Genes around lnc-RNF152-3 on UCSC Golden Path with GeneCards custom track
lnc-RNF152-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-RNF152-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-RNF152-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-RNF152-3 Gene

Proteins for lnc-RNF152-3 Gene

Post-translational modifications for lnc-RNF152-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-RNF152-3 Gene

Domains & Families for lnc-RNF152-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-RNF152-3 Gene

Function for lnc-RNF152-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-RNF152-3 Gene

Localization for lnc-RNF152-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-RNF152-3 Gene

Pathways & Interactions for lnc-RNF152-3 Gene

PathCards logo

SuperPathways for lnc-RNF152-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-RNF152-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-RNF152-3 Gene

Drugs & Compounds for lnc-RNF152-3 Gene

No Compound Related Data Available

Transcripts for lnc-RNF152-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-RNF152-3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008B3A37_9606 lncRNA 552 2

LncBook: HSALNT0252165,

LNCipedia: lnc-RNF152-3:11,

URS00008B50E6_9606 lncRNA 457 2

LncBook: HSALNT0252167,

LNCipedia: lnc-RNF152-3:10,

URS0001BEB623_9606 lncRNA 792 1

LncBook: HSALNT0252166,

URS0001BDC33B_9606 lncRNA 549 1

LncBook: HSALNT0252165,

URS0001BF48A2_9606 lncRNA 457 1

LncBook: HSALNT0252167,

lnc-RNF152-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-RNF152-3 Gene

No ASD Table

Relevant External Links for lnc-RNF152-3 Gene

GeneLoc Exon Structure for
lnc-RNF152-3

No data available for mRNA/cDNA for lnc-RNF152-3 Gene

Expression for lnc-RNF152-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-RNF152-3 Gene

Orthologs for lnc-RNF152-3 Gene

No data available for Orthologs and Evolution for lnc-RNF152-3 Gene

Paralogs for lnc-RNF152-3 Gene

No data available for Paralogs for lnc-RNF152-3 Gene

Variants for lnc-RNF152-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-RNF152-3 Gene

Disorders for lnc-RNF152-3 Gene

No disorders were found for lnc-RNF152-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-RNF152-3 Gene

Publications for lnc-RNF152-3 Gene

No publications were found for lnc-RNF152-3 Gene.

No data available for Mastermind for lnc-RNF152-3 Gene

Products for lnc-RNF152-3 Gene

Sources for lnc-RNF152-3 Gene