Aliases for lnc-RAPGEF6-1 Gene

Subcategory (RNA class) for lnc-RAPGEF6-1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for lnc-RAPGEF6-1 Gene

  • Lnc-RAPGEF6-1 168
  • NONHSAG041496 92

No data available for External Ids for lnc-RAPGEF6-1 Gene

Summaries for lnc-RAPGEF6-1 Gene

GeneCards Summary for lnc-RAPGEF6-1 Gene

lnc-RAPGEF6-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-RAPGEF6-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-RAPGEF6-1 Gene

Genomics for lnc-RAPGEF6-1 Gene

GeneHancer (GH) Regulatory Elements for lnc-RAPGEF6-1 Gene

Promoters and enhancers for lnc-RAPGEF6-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J131366 Enhancer 0.4 dbSUPER 500.7 -1.9 -1872 1.2 AFF1 RBM25 CEBPB ZBTB33 CHAMP1 lnc-RAPGEF6-1 HINT1 LYRM7 RF00017-4873 CDC42SE2 lnc-CDC42SE2-1 RF00017-4871
GH05J131363 Enhancer 0.3 ENCODE dbSUPER 500.7 +1.6 1640 0.2 lnc-RAPGEF6-1 piR-46657 HINT1 LYRM7 piR-54324-020 lnc-CDC42SE2-1 CDC42SE2 RF00017-4871
GH05J131364 Enhancer 0.3 dbSUPER 500.7 +0.8 844 1.2 SPI1 lnc-RAPGEF6-1 piR-46657 HINT1 LYRM7 RAPGEF6 piR-54324-020 lnc-CDC42SE2-1 CDC42SE2 RF00017-4871
GH05J131373 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 -13.1 -13068 12.8 ZBTB40 ZNF217 CTCF TCF12 REST RELA MYC RAD21 CTBP1 TRIM22 MEIKIN HINT1 LYRM7 CDC42SE2 P4HA2 FNIP1 RAPGEF6 ACSL6 lnc-RAPGEF6-1 RF00017-4873
GH05J131392 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -29.1 -29105 4.4 ZBTB40 EP300 JUND RELA FOXA2 BCL11A ZNF316 POLR2G ARNT ZBTB33 MEIKIN CDC42SE2 FNIP1 RAPGEF6 RF00017-4873 LOC105379173 lnc-RAPGEF6-1 RF00017-4872 RF00017-4871
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-RAPGEF6-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-RAPGEF6-1 Gene

Genomic Locations for lnc-RAPGEF6-1 Gene
chr5:131,365,275-131,365,663
(GRCh38/hg38)
Size:
389 bases
Orientation:
Minus strand

Genomic View for lnc-RAPGEF6-1 Gene

Genes around lnc-RAPGEF6-1 on UCSC Golden Path with GeneCards custom track

lnc-RAPGEF6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-RAPGEF6-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-RAPGEF6-1 Gene

Proteins for lnc-RAPGEF6-1 Gene

Post-translational modifications for lnc-RAPGEF6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-RAPGEF6-1 Gene

Domains & Families for lnc-RAPGEF6-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-RAPGEF6-1 Gene

Function for lnc-RAPGEF6-1 Gene

Phenotypes From GWAS Catalog for lnc-RAPGEF6-1 Gene

miRNA for lnc-RAPGEF6-1 Gene

miRTarBase miRNAs that target lnc-RAPGEF6-1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for lnc-RAPGEF6-1 Gene

Localization for lnc-RAPGEF6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-RAPGEF6-1 Gene

Pathways & Interactions for lnc-RAPGEF6-1 Gene

PathCards logo

SuperPathways for lnc-RAPGEF6-1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for lnc-RAPGEF6-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-RAPGEF6-1 Gene

Drugs & Compounds for lnc-RAPGEF6-1 Gene

No Compound Related Data Available

Transcripts for lnc-RAPGEF6-1 Gene

mRNA/cDNA for lnc-RAPGEF6-1 Gene

1 RNACentral transcripts :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-RAPGEF6-1 Gene

No ASD Table

Relevant External Links for lnc-RAPGEF6-1 Gene

GeneLoc Exon Structure for
lnc-RAPGEF6-1

Expression for lnc-RAPGEF6-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-RAPGEF6-1 Gene

Orthologs for lnc-RAPGEF6-1 Gene

No data available for Orthologs and Evolution for lnc-RAPGEF6-1 Gene

Paralogs for lnc-RAPGEF6-1 Gene

No data available for Paralogs for lnc-RAPGEF6-1 Gene

Variants for lnc-RAPGEF6-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-RAPGEF6-1 Gene

Disorders for lnc-RAPGEF6-1 Gene

No disorders were found for lnc-RAPGEF6-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-RAPGEF6-1 Gene

Publications for lnc-RAPGEF6-1 Gene

No publications were found for lnc-RAPGEF6-1 Gene.

No data available for Mastermind for lnc-RAPGEF6-1 Gene

Products for lnc-RAPGEF6-1 Gene

Sources for lnc-RAPGEF6-1 Gene