Aliases for lnc-PTPRR-3 Gene

Subcategory (RNA class) for lnc-PTPRR-3 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-PTPRR-3 Gene

  • HSALNG0092335 164
  • Lnc-PTPRR-3 165

No data available for External Ids for lnc-PTPRR-3 Gene

Summaries for lnc-PTPRR-3 Gene

GeneCards Summary for lnc-PTPRR-3 Gene

lnc-PTPRR-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-PTPRR-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-PTPRR-3 Gene

Genomics for lnc-PTPRR-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-PTPRR-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J071299 Enhancer 1 Ensembl ENCODE 0.4 +15.9 15855 0.8 IKZF1 JUND MTA2 PKNOX1 MTA1 DPF2 HDAC1 SOX6 TCF12 EP300 piR-36746-002 LOC105369832 lnc-PTPRR-3 LGR5 TSPAN8 PTPRR
GH12J071300 Enhancer 0.8 ENCODE 0.4 +14.4 14404 0.9 DPF2 SOX6 FOXJ2 TCF12 EP300 CEBPB GTF2E2 ZNF766 FOXK2 MEF2D piR-36746-002 LOC105369832 lnc-PTPRR-3 LGR5 TSPAN8 PTPRR
GH12J071312 Enhancer 0.3 Ensembl 0.7 +2.6 2555 0.8 CEBPB JUND LOC105369832 lnc-PTPRR-3 piR-36746-002 LGR5 TSPAN8 PTPRR
GH12J071152 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.1 +156.6 156645 13.4 CREB1 GATAD2A REST SOX13 RCOR2 RBFOX2 RXRB IRF2 SP1 CEBPA TSPAN8 ENSG00000258053 piR-53063-047 piR-33432-124 lnc-PTPRR-3 PTPRR LGR5
GH12J071235 Enhancer 1 Ensembl ENCODE 0.2 +79.4 79355 3.2 LEF1 IKZF1 MTA2 PKNOX1 MTA1 BRD9 ZNF24 DPF2 HDAC1 SOX6 LOC105369831 piR-36746-002 lnc-PTPRR-3 TSPAN8 LGR5 PTPRR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-PTPRR-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-PTPRR-3 Gene

Genomic Locations for lnc-PTPRR-3 Gene
chr12:71,139,833-71,315,756
(GRCh38/hg38)
Size:
175,924 bases
Orientation:
Minus strand

Genomic View for lnc-PTPRR-3 Gene

Genes around lnc-PTPRR-3 on UCSC Golden Path with GeneCards custom track
lnc-PTPRR-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-PTPRR-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-PTPRR-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-PTPRR-3 Gene

Proteins for lnc-PTPRR-3 Gene

Post-translational modifications for lnc-PTPRR-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-PTPRR-3 Gene

Domains & Families for lnc-PTPRR-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-PTPRR-3 Gene

Function for lnc-PTPRR-3 Gene

Phenotypes From GWAS Catalog for lnc-PTPRR-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-PTPRR-3 Gene

Localization for lnc-PTPRR-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-PTPRR-3 Gene

Pathways & Interactions for lnc-PTPRR-3 Gene

PathCards logo

SuperPathways for lnc-PTPRR-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-PTPRR-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-PTPRR-3 Gene

Drugs & Compounds for lnc-PTPRR-3 Gene

No Compound Related Data Available

Transcripts for lnc-PTPRR-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-PTPRR-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BEBA6_9606 lncRNA 627 2

LncBook: HSALNT0191302,

LNCipedia: lnc-PTPRR-3:2,

URS00008BB456_9606 lncRNA 398 2

LncBook: HSALNT0191301,

LNCipedia: lnc-PTPRR-3:3,

URS00008C011F_9606 lncRNA 246 1

LNCipedia: lnc-PTPRR-3:1,

lnc-PTPRR-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-PTPRR-3 Gene

No ASD Table

Relevant External Links for lnc-PTPRR-3 Gene

GeneLoc Exon Structure for
lnc-PTPRR-3

No data available for mRNA/cDNA for lnc-PTPRR-3 Gene

Expression for lnc-PTPRR-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-PTPRR-3 Gene

Orthologs for lnc-PTPRR-3 Gene

No data available for Orthologs and Evolution for lnc-PTPRR-3 Gene

Paralogs for lnc-PTPRR-3 Gene

No data available for Paralogs for lnc-PTPRR-3 Gene

Variants for lnc-PTPRR-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-PTPRR-3 Gene

Disorders for lnc-PTPRR-3 Gene

No disorders were found for lnc-PTPRR-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-PTPRR-3 Gene

Publications for lnc-PTPRR-3 Gene

No publications were found for lnc-PTPRR-3 Gene.

No data available for Mastermind for lnc-PTPRR-3 Gene

Products for lnc-PTPRR-3 Gene

Sources for lnc-PTPRR-3 Gene