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Aliases for lnc-PGD-1 Gene
Data sources for lnc-PGD-1 Gene:
RNA type for lnc-PGD-1 Gene
lncRNA
No data available for External Ids for lnc-PGD-1 Gene
Summaries for lnc-PGD-1 Gene
GeneCards Summary for lnc-PGD-1 Gene
lnc-PGD-1 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for lnc-PGD-1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-PGD-1 Gene
Genomics for lnc-PGD-1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for lnc-PGD-1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J010386 | Promoter/Enhancer | 1.5 | Ensembl ENCODE CraniofacialAtlas dbSUPER | 250.7 | -1.5 | -1538 | 3.3 | IKZF1 CEBPA NFIC YY1 REST SMAD5 EP300 MAFF RXRA CUX1 | HSALNG0000763 lnc-PGD-1 PGD piR-43105-008 ENSG00000284735 lnc-DFFA-11 KIF1B | |
| GH01J010385 | Enhancer | 0.3 | dbSUPER | 0.7 | -4.4 | -4384 | 0.9 | SPI1 | piR-43105-008 lnc-PGD-1 ENSG00000284735 lnc-DFFA-11 PGD KIF1B | |
| GH01J010387 | Enhancer | 0.2 | dbSUPER | 0.7 | -3.6 | -3618 | 0.5 | piR-43105-008 PGD lnc-PGD-1 ENSG00000284735 lnc-DFFA-11 KIF1B |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around lnc-PGD-1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for lnc-PGD-1 Gene
Latest Assembly
- chr1:10,390,001-10,390,296
- (GRCh38/hg38)
- Size:
- 296 bases
- Orientation:
- Plus strand
Genomic View for lnc-PGD-1 Gene
Genes around lnc-PGD-1 on UCSC Golden Path with GeneCards custom track
lnc-PGD-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
lnc-PGD-1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
No data available for Cytogenetic band and RefSeq DNA sequence for lnc-PGD-1 Gene
Proteins for lnc-PGD-1 Gene
Post-translational modifications for lnc-PGD-1 Gene
No Post-translational modifications
No data available for DME Specific Peptides for lnc-PGD-1 Gene
Domains & Families for lnc-PGD-1 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-PGD-1 Gene
Function for lnc-PGD-1 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-PGD-1 Gene
Localization for lnc-PGD-1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-PGD-1 Gene
Transcripts for lnc-PGD-1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-PGD-1 Gene
| RNAcentral Transcript ID | RNA Type | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008B77D3_9606 | lncRNA | 296 | 2 |
LNCipedia: lnc-PGD-1:1, NONCODE: NONHSAT000852.2, |
lnc-PGD-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for lnc-PGD-1 Gene
- GeneLoc Exon Structure for
- lnc-PGD-1
No data available for mRNA/cDNA for lnc-PGD-1 Gene
Expression for lnc-PGD-1 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-PGD-1 Gene
Orthologs for lnc-PGD-1 Gene
No data available for Orthologs and Evolution for lnc-PGD-1 Gene
Paralogs for lnc-PGD-1 Gene
No data available for Paralogs for lnc-PGD-1 Gene
Variants for lnc-PGD-1 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-PGD-1 Gene
Disorders for lnc-PGD-1 Gene
No disorders were found for lnc-PGD-1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-PGD-1 Gene
Publications for lnc-PGD-1 Gene
No publications were found for lnc-PGD-1 Gene.
No data available for Mastermind for lnc-PGD-1 Gene
Products for lnc-PGD-1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for lnc-PGD-1
- Origene Custom Protein Services for lnc-PGD-1
- Browse OriGene Inhibitory RNA Products For lnc-PGD-1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for lnc-PGD-1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For lnc-PGD-1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for lnc-PGD-1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for lnc-PGD-1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for lnc-PGD-1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for lnc-PGD-1
Sources for lnc-PGD-1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Apr-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) ASD
- (27) SAGE
- (28) SOURCE
- (29) HomoloGene
- (30) PanEnsembl
- (31) euGenes
- (32) SGD
- (33) FlyBase
- (34) WormBase
- (35) Pseudogene
- (36) DGV
- (37) dbSNP
- (38) GenAtlas
- (39) HGMD
- (40) GAD
- (41) BGMUT
- (42) HuGE
- (43) Atlas
- (44) GenBank
- (45) HORDE
- (46) HUGE
- (47) IMGT
- (48) Leiden
- (49) miRBase
- (50) DME
- (51) OriGene
- (52) PubMed
- (53) R&D Systems
- (54) Tocris
- (55) Abcam
- (56) Novus Biologicals
- (57) ProSpec
- (58) Sino Biological
- (59) GenScript
- (60) Qiagen
- (61) OCA
- (62) Proteopedia
- (63) MOPED
- (64) neXtProt
- (65) Reactome
- (66) GeneGo (Thomson Reuters)
- (67) DISEASES
- (68) SIMAP
- (69) GenomeRNAi
- (70) LifeMap
- (71) miRTarBase
- (72) MalaCards
- (73) Invitrogen
- (74) BitterDB
- (75) ESI-BIO
- (76) RefSeq
- (77) BioSystems
- (78) MaxQB
- (79) IUPHAR
- (80) BioGPS
- (81) Illumina
- (82) COMPARTMENTS
- (83) HOMER
- (84) PaxDb
- (85) ApexBio
- (86) Addgene
- (87) antibodies-online
- (88) CYP
- (89) NONCODE
- (90) TreeFam
- (91) PathCards
- (92) GeneReviews
- (93) GeneTex
- (94) Taconic Biosciences
- (95) GTEx
- (96) ProteomicsDB
- (97) SCBT
- (98) DGIdb
- (99) ClinicalTrials
- (100) RVIS
- (101) SIGNOR
- (102) diseasecard
- (103) NIH Rare Diseases
- (104) Orphanet
- (105) UMLS
- (106) GTR
- (107) Disease Ontology
- (108) MedlinePlus Genetics
- (109) MeSH
- (110) MedlinePlus
- (111) CDC
- (112) NINDS
- (113) NCBI Bookshelf
- (114) ClinVar
- (115) Gene Damage Index
- (116) HPO
- (117) UDN
- (118) VISTA
- (119) FANTOM5
- (120) ENCODE
- (121) ProSci
- (122) Horizon
- (123) The Signaling Pathways Project (SPP)
- (124) IID
- (125) VectorBuilder
- (126) SNPedia
- (127) BRCA Exchange
- (128) CIViC
- (129) ProteoGenix
- (130) dbSUPER
- (131) TISSUES
- (132) Gene ORGANizer
- (133) abm
- (134) Human Protein Atlas
- (135) GWAS Catalog
- (136) Monarch Initiative
- (137) DataMed
- (138) HumanCyc
- (139) UCNEbase
- (140) EPDnew
- (141) Applied Biosystems
- (142) GlyConnect
- (143) Aminode
- (144) GeneCopoeia
- (145) GPS-Prot
- (146) RNAcentral
- (147) LncRNADisease
- (148) LOVD
- (149) miR2Disease
- (150) DiseaseEnhancer
- (151) Boster Bio
- (152) Biorbyt
- (153) Biocompare
- (154) Mastermind
- (155) CTD^2 Dashboard
- (156) CraniofacialAtlas
- (157) GeneImprint
- (158) Synthego
- (159) ENA
- (160) GtRNAdb
- (161) LncBase
- (162) LncBook
- (163) LNCipedia
- (164) Modomics
- (165) PDBe
- (166) Rfam
- (167) SILVA
- (168) snOPY
- (169) SRPDB
- (170) GENCODE
- (171) TarBase
- (172) Open Targets Platform
- (173) 5SRRNADB
- (174) snoDB
- (175) MirGeneDB
- (176) Alliance of Genome Resources