Aliases for lnc-PCDH12-4 Gene

Subcategory (RNA class) for lnc-PCDH12-4 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for lnc-PCDH12-4 Gene

  • NONHSAG041777 92
  • Lnc-PCDH12-4 168

No data available for External Ids for lnc-PCDH12-4 Gene

Summaries for lnc-PCDH12-4 Gene

GeneCards Summary for lnc-PCDH12-4 Gene

lnc-PCDH12-4 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-PCDH12-4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-PCDH12-4 Gene

Genomics for lnc-PCDH12-4 Gene

GeneHancer (GH) Regulatory Elements for lnc-PCDH12-4 Gene

Promoters and enhancers for lnc-PCDH12-4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J141922 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.1 51 2.2 ZBTB40 ZNF217 EP300 SIN3A TCF12 POLR2G GTF2E2 PHF8 TEAD4 ZFX DELE1 lnc-PCDH12-4 piR-38756-004 RF00017-4964
GH05J141918 Enhancer 1 Ensembl ENCODE 0.7 +4.0 4006 1.7 ZBTB11 CTBP1 JUN NCOR1 RELA MBD2 ZNF316 MAFF MYNN TRIM28 lnc-PCDH12-4 piR-38756-004 RF00017-4964
GH05J141913 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.4 +9.4 9444 0.7 CTCF NRF1 USF1 ZIC2 GABPA TARDBP REST TOE1 ZBTB7A CTBP1 lnc-PCDH12-4 piR-38756-004 RF00017-4964
GH05J141901 Enhancer 0.6 Ensembl 0.4 +20.2 20155 1.6 MYC CTBP1 GATA3 PBX2 ZFHX2 RCOR1 GATA2 VEZF1 DPF2 CHD2 PCDH1 RNF14 PCDH12 piR-38756-004 ENSG00000287726 lnc-PCDH12-4 RF00017-4964
GH05J141905 Enhancer 0.5 Ensembl 0.4 +17.4 17355 1.2 ZNF585B NCOR1 ZNF146 MTA2 TEAD4 CBFA2T2 ZNF512 EMSY PCDH1 RNF14 PCDH12 DELE1 piR-38756-004 lnc-PCDH12-4 ENSG00000287726 RF00017-4964
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-PCDH12-4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-PCDH12-4 Gene

Genomic Locations for lnc-PCDH12-4 Gene
chr5:141,922,569-141,923,756
(GRCh38/hg38)
Size:
1,188 bases
Orientation:
Minus strand

Genomic View for lnc-PCDH12-4 Gene

Genes around lnc-PCDH12-4 on UCSC Golden Path with GeneCards custom track

lnc-PCDH12-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-PCDH12-4 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-PCDH12-4 Gene

Proteins for lnc-PCDH12-4 Gene

Post-translational modifications for lnc-PCDH12-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-PCDH12-4 Gene

Domains & Families for lnc-PCDH12-4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-PCDH12-4 Gene

Function for lnc-PCDH12-4 Gene

miRNA for lnc-PCDH12-4 Gene

miRTarBase miRNAs that target lnc-PCDH12-4

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for lnc-PCDH12-4 Gene

Localization for lnc-PCDH12-4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-PCDH12-4 Gene

Pathways & Interactions for lnc-PCDH12-4 Gene

PathCards logo

SuperPathways for lnc-PCDH12-4 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for lnc-PCDH12-4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-PCDH12-4 Gene

Drugs & Compounds for lnc-PCDH12-4 Gene

No Compound Related Data Available

Transcripts for lnc-PCDH12-4 Gene

mRNA/cDNA for lnc-PCDH12-4 Gene

2 RNACentral transcripts :
1 NONCODE transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-PCDH12-4 Gene

No ASD Table

Relevant External Links for lnc-PCDH12-4 Gene

GeneLoc Exon Structure for
lnc-PCDH12-4

Expression for lnc-PCDH12-4 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-PCDH12-4 Gene

Orthologs for lnc-PCDH12-4 Gene

No data available for Orthologs and Evolution for lnc-PCDH12-4 Gene

Paralogs for lnc-PCDH12-4 Gene

No data available for Paralogs for lnc-PCDH12-4 Gene

Variants for lnc-PCDH12-4 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-PCDH12-4 Gene

Disorders for lnc-PCDH12-4 Gene

No disorders were found for lnc-PCDH12-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-PCDH12-4 Gene

Publications for lnc-PCDH12-4 Gene

No publications were found for lnc-PCDH12-4 Gene.

No data available for Mastermind for lnc-PCDH12-4 Gene

Products for lnc-PCDH12-4 Gene

Sources for lnc-PCDH12-4 Gene