lnc-NPL-2-001 Gene (RNA Gene)

 

GC01P182831
GIFtS:
2
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Aliases for lnc-NPL-2-001 Gene

Subcategory (RNA class) for lnc-NPL-2-001 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-NPL-2-001 Gene

  • NONHSAG003676.2 91
  • Lnc-NPL-2 165

No data available for External Ids for lnc-NPL-2-001 Gene

Summaries for lnc-NPL-2-001 Gene

GeneCards Summary for lnc-NPL-2-001 Gene

lnc-NPL-2-001 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-NPL-2-001 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-NPL-2-001 Gene

Genomics for lnc-NPL-2-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-NPL-2-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J182830 Enhancer 0.6 Ensembl 600.7 -1.9 -1889 0.4 IKZF2 PAX8 RELB ELF1 IKZF1 SPI1 TBX21 MTA2 BHLHE40 RAD51 lnc-NPL-2-001 NPL DHX9 RF00017-418
GH01J182833 Enhancer 0.3 Ensembl 600.7 +1.8 1812 0.2 SCRT2 lnc-NPL-2-001 lnc-NPL-2-002 NPL DHX9 lnc-SHCBP1L-1
GH01J182829 Enhancer 0.5 Ensembl 0.7 -2.4 -2388 0.2 IKZF2 PAX8 RELB ELF1 IKZF1 TBX21 MTA2 BHLHE40 NPL lnc-NPL-2-001 RF00017-418 DHX9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-NPL-2-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-NPL-2-001 Gene

Genomic Locations for lnc-NPL-2-001 Gene
chr1:182,831,689-182,833,098
(GRCh38/hg38)
Size:
1,410 bases
Orientation:
Plus strand

Genomic View for lnc-NPL-2-001 Gene

Genes around lnc-NPL-2-001 on UCSC Golden Path with GeneCards custom track
lnc-NPL-2-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-NPL-2-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-NPL-2-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-NPL-2-001 Gene

Proteins for lnc-NPL-2-001 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for lnc-NPL-2-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-NPL-2-001 Gene

Domains & Families for lnc-NPL-2-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-NPL-2-001 Gene

Function for lnc-NPL-2-001 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-NPL-2-001 Gene

Localization for lnc-NPL-2-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-NPL-2-001 Gene

Pathways & Interactions for lnc-NPL-2-001 Gene

PathCards logo

SuperPathways for lnc-NPL-2-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-NPL-2-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-NPL-2-001 Gene

Drugs & Compounds for lnc-NPL-2-001 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for lnc-NPL-2-001 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-NPL-2-001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BB09C_9606 lncRNA 1410 2

LNCipedia: lnc-NPL-2:1,

NONCODE: NONHSAT008335.2,

lnc-NPL-2-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-NPL-2-001 Gene

No ASD Table

Relevant External Links for lnc-NPL-2-001 Gene

GeneLoc Exon Structure for
lnc-NPL-2-001

No data available for mRNA/cDNA for lnc-NPL-2-001 Gene

Expression for lnc-NPL-2-001 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-NPL-2-001 Gene

Orthologs for lnc-NPL-2-001 Gene

No data available for Orthologs and Evolution for lnc-NPL-2-001 Gene

Paralogs for lnc-NPL-2-001 Gene

No data available for Paralogs for lnc-NPL-2-001 Gene

Variants for lnc-NPL-2-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-NPL-2-001 Gene

Disorders for lnc-NPL-2-001 Gene

No disorders were found for lnc-NPL-2-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-NPL-2-001 Gene

Publications for lnc-NPL-2-001 Gene

No publications were found for lnc-NPL-2-001 Gene.

No data available for Mastermind for lnc-NPL-2-001 Gene

Products for lnc-NPL-2-001 Gene

Sources for lnc-NPL-2-001 Gene