lnc-NEFH-1 Gene (RNA Gene)

 

GC22P029604
GIFtS:
5
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Aliases for lnc-NEFH-1 Gene

Subcategory (RNA class) for lnc-NEFH-1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-NEFH-1 Gene

  • NONHSAG033645.2 91
  • Lnc-NEFH-1 165

No data available for External Ids for lnc-NEFH-1 Gene

Summaries for lnc-NEFH-1 Gene

GeneCards Summary for lnc-NEFH-1 Gene

lnc-NEFH-1 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for lnc-NEFH-1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for lnc-NEFH-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for lnc-NEFH-1 Gene

Genomics for lnc-NEFH-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-NEFH-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22J029600 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.1 -90 5 SP1 CREB1 PRDM10 ZNF629 REST POLR2A FOS JUND LARP7 GABPA NF2 lnc-NEFH-1 lnc-NIPSNAP1-4 EWSR1 SF3A1 THOC5 NIPSNAP1 UQCR10 MTMR3
GH22J029616 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +19.1 19139 11.6 CEBPG CTCF PRDM10 ZNF629 ZNF512 RFX5 ZNF692 FOXA1 PRDM1 RFX1 THOC5 NIPSNAP1 RNU5F-5P GAS2L1 NF2 piR-33614-190 lnc-NEFH-1 RF00017-3797 CABP7
GH22J029640 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 +37.9 37925 2.2 PRDM10 ZNF629 ZNF692 PRDM1 ZIC2 ZSCAN4 PKNOX1 ZNF561 ZBTB44 KLF9 RF00017-3797 piR-54764-420 THOC5 RNU5F-5P ENSG00000249590 SEC14L2 NF2 NIPSNAP1 MTMR3 lnc-NEFH-1
GH22J029606 Enhancer 0.4 ENCODE dbSUPER 0.7 +3.4 3396 1.5 ZBTB6 RF00017-3796 RPEP4 lnc-CABP7-2 THOC5 GAS2L1 NF2 lnc-NEFH-1 CABP7
GH22J029631 Enhancer 0.8 ENCODE dbSUPER 0.3 +29.8 29752 4.1 HDAC1 NFE2 ZNF316 MAFG EHMT2 ZNF189 ZNF18 NR2F6 ZNF3 JUN LIF RF00017-3797 piR-33614-190 NF2 lnc-NEFH-1 CABP7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-NEFH-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-NEFH-1 Gene

Genomic Locations for lnc-NEFH-1 Gene
chr22:29,603,575-29,668,018
(GRCh38/hg38)
Size:
64,444 bases
Orientation:
Plus strand

Genomic View for lnc-NEFH-1 Gene

Genes around lnc-NEFH-1 on UCSC Golden Path with GeneCards custom track
lnc-NEFH-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-NEFH-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-NEFH-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-NEFH-1 Gene

Proteins for lnc-NEFH-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for lnc-NEFH-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-NEFH-1 Gene

Domains & Families for lnc-NEFH-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-NEFH-1 Gene

Function for lnc-NEFH-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-NEFH-1 Gene

Localization for lnc-NEFH-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-NEFH-1 Gene

Pathways & Interactions for lnc-NEFH-1 Gene

PathCards logo

SuperPathways for lnc-NEFH-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-NEFH-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-NEFH-1 Gene

Drugs & Compounds for lnc-NEFH-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for lnc-NEFH-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-NEFH-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BB740_9606 lncRNA 248 2

LNCipedia: lnc-NEFH-1:1,

NONCODE: NONHSAT084713.2,

URS00008B60E6_9606 lncRNA 233 2

LNCipedia: lnc-NEFH-1:2,

NONCODE: NONHSAT084714.2,

URS00009B2C90_9606 lncRNA 46324 1

NONCODE: NONHSAT192236.1,

URS00009BF842_9606 lncRNA 746 1

NONCODE: NONHSAT192235.1,

lnc-NEFH-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-NEFH-1 Gene

No ASD Table

Relevant External Links for lnc-NEFH-1 Gene

GeneLoc Exon Structure for
lnc-NEFH-1

No data available for mRNA/cDNA for lnc-NEFH-1 Gene

Expression for lnc-NEFH-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-NEFH-1 Gene

Orthologs for lnc-NEFH-1 Gene

No data available for Orthologs and Evolution for lnc-NEFH-1 Gene

Paralogs for lnc-NEFH-1 Gene

No data available for Paralogs for lnc-NEFH-1 Gene

Variants for lnc-NEFH-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-NEFH-1 Gene

Disorders for lnc-NEFH-1 Gene

No disorders were found for lnc-NEFH-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-NEFH-1 Gene

Publications for lnc-NEFH-1 Gene

No publications were found for lnc-NEFH-1 Gene.

No data available for Mastermind for lnc-NEFH-1 Gene

Products for lnc-NEFH-1 Gene

Sources for lnc-NEFH-1 Gene