Aliases for lnc-NAT9-3 Gene

Data sources for lnc-NAT9-3 Gene:

Subcategory (RNA class) for lnc-NAT9-3 Gene


Aliases for lnc-NAT9-3 Gene

No data available for External Ids for lnc-NAT9-3 Gene

Summaries for lnc-NAT9-3 Gene

GeneCards Summary for lnc-NAT9-3 Gene

lnc-NAT9-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-NAT9-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-NAT9-3 Gene

Genomics for lnc-NAT9-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-NAT9-3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J074775 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.9 -1913 6.6 CHD2 SP1 MXD4 MNT IKZF1 SMAD5 ETS1 ZFP64 MBD2 ZNF217 NAT9 TMEM104 HSALNG0118684 lnc-NAT9-3 CD300LF SLC9A3R1 RAB37 GGA3 NUP85 NT5C
GH17J074756 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +12.3 12344 15.2 CHD2 MXD4 CEBPA ZNF217 BRCA1 ZFP64 POLR2A CTCF ZBTB7B ZEB1 HSALNG0118681 NUP85 NT5C NAT9 GGA3 TSEN54 SAP30BP RAB37 RECQL5 SLC9A3R1
GH17J074773 Enhancer 0.8 ENCODE dbSUPER 0.7 +2.5 2478 1.4 SAP130 RARA JUND HMG20A POLR2A BHLHE40 GATAD1 KDM1A HNF4A ARID3A RAB37 NAT9 lnc-NAT9-3 piR-58580 SLC9A3R1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-NAT9-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-NAT9-3 Gene

Latest Assembly
5,815 bases
Minus strand

Genomic View for lnc-NAT9-3 Gene

Genes around lnc-NAT9-3 on UCSC Golden Path with GeneCards custom track
lnc-NAT9-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-NAT9-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-NAT9-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-NAT9-3 Gene

Proteins for lnc-NAT9-3 Gene

Post-translational modifications for lnc-NAT9-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-NAT9-3 Gene

Domains & Families for lnc-NAT9-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-NAT9-3 Gene

Function for lnc-NAT9-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-NAT9-3 Gene

Localization for lnc-NAT9-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-NAT9-3 Gene

Pathways & Interactions for lnc-NAT9-3 Gene

PathCards logo

SuperPathways for lnc-NAT9-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-NAT9-3 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-NAT9-3 Gene

Drugs & Compounds for lnc-NAT9-3 Gene

No Compound Related Data Available

Transcripts for lnc-NAT9-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-NAT9-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D6E808_9606 lncRNA 746 2

LncBook: HSALNT0245185,

LNCipedia: lnc-NAT9-3:5,

URS00008B99E1_9606 lncRNA 420 2

LncBook: HSALNT0245186,

LNCipedia: lnc-NAT9-3:3,

URS00009C24E7_9606 lncRNA 1740 1


URS0000D6D986_9606 lncRNA 863 1

LNCipedia: lnc-NAT9-3:2,

URS0001BFA20C_9606 lncRNA 744 1

LncBook: HSALNT0245185,

lnc-NAT9-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-NAT9-3 Gene

No ASD Table

Relevant External Links for lnc-NAT9-3 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for lnc-NAT9-3 Gene

Expression for lnc-NAT9-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-NAT9-3 Gene

Orthologs for lnc-NAT9-3 Gene

No data available for Orthologs and Evolution for lnc-NAT9-3 Gene

Paralogs for lnc-NAT9-3 Gene

No data available for Paralogs for lnc-NAT9-3 Gene

Variants for lnc-NAT9-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-NAT9-3 Gene

Disorders for lnc-NAT9-3 Gene

No disorders were found for lnc-NAT9-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-NAT9-3 Gene

Publications for lnc-NAT9-3 Gene

No publications were found for lnc-NAT9-3 Gene.

No data available for Mastermind for lnc-NAT9-3 Gene

Products for lnc-NAT9-3 Gene

Sources for lnc-NAT9-3 Gene