lnc-MGAT5-5 Gene (RNA Gene)

 

GC02P133597
GIFtS:
5
See more...

Aliases for lnc-MGAT5-5 Gene

Data sources for lnc-MGAT5-5 Gene:

Subcategory (RNA class) for lnc-MGAT5-5 Gene

lncRNA

Aliases for lnc-MGAT5-5 Gene

No data available for External Ids for lnc-MGAT5-5 Gene

Summaries for lnc-MGAT5-5 Gene

GeneCards Summary for lnc-MGAT5-5 Gene

lnc-MGAT5-5 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for lnc-MGAT5-5 Gene

Additional gene information for lnc-MGAT5-5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for lnc-MGAT5-5 Gene

Genomics for lnc-MGAT5-5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-MGAT5-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J133596 Enhancer 0.3 Ensembl 250.7 +0.9 911 0.8 HLF RF00100-066 RN7SKP93 lnc-MGAT5-5 HSALNG0018998 NCKAP5 LYPD1
GH02J133566 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 -28.4 -28376 2.3 RXRA SIN3A RAD21 JUND ZBTB40 HNF4A FOXA1 REST MAX SP1 NCKAP5 ENSG00000223430 lnc-MGAT5-5 LYPD1
GH02J133591 Enhancer 0.7 Ensembl ENCODE 0.7 -4.9 -4889 0.8 BHLHE40 RAD51 RAD21 SP7 ZNF561 MNT USF1 lnc-MGAT5-5 ENSG00000223430 NCKAP5 LYPD1
GH02J133578 Enhancer 0.8 Ensembl ENCODE 0.4 -15.8 -15789 3.4 SIN3A RXRA ZBTB33 JUND TCF7L2 HNF4A PKNOX1 RAD21 ATF2 MAX NCKAP5 lnc-MGAT5-5 ENSG00000223430 LYPD1
GH02J133576 Enhancer 0.6 Ensembl 0.4 -19.1 -19089 0.8 FOXA2 RXRA RARA ZBTB33 JUND HNF4A NR2F6 REST SP1 ARID3A lnc-MGAT5-5 ENSG00000223430 NCKAP5 LYPD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-MGAT5-5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-MGAT5-5 Gene

Latest Assembly
chr2:133,596,090-133,596,399
(GRCh38/hg38)
Size:
310 bases
Orientation:
Plus strand

Genomic View for lnc-MGAT5-5 Gene

Genes around lnc-MGAT5-5 on UCSC Golden Path with GeneCards custom track
lnc-MGAT5-5 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-MGAT5-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-MGAT5-5 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-MGAT5-5 Gene

Proteins for lnc-MGAT5-5 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for lnc-MGAT5-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-MGAT5-5 Gene

Domains & Families for lnc-MGAT5-5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-MGAT5-5 Gene

Function for lnc-MGAT5-5 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-MGAT5-5 Gene

Localization for lnc-MGAT5-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-MGAT5-5 Gene

Pathways & Interactions for lnc-MGAT5-5 Gene

PathCards logo

SuperPathways for lnc-MGAT5-5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-MGAT5-5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-MGAT5-5 Gene

Drugs & Compounds for lnc-MGAT5-5 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for lnc-MGAT5-5 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-MGAT5-5 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B5761_9606 lncRNA 310 2

LNCipedia: lnc-MGAT5-5:1,

NONCODE: NONHSAT074550.2,

URS0001BE0002_9606 lncRNA 309 1

LncBook: HSALNT0040116,

lnc-MGAT5-5 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-MGAT5-5 Gene

No ASD Table

Relevant External Links for lnc-MGAT5-5 Gene

GeneLoc Exon Structure for
lnc-MGAT5-5

No data available for mRNA/cDNA for lnc-MGAT5-5 Gene

Expression for lnc-MGAT5-5 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-MGAT5-5 Gene

Orthologs for lnc-MGAT5-5 Gene

No data available for Orthologs and Evolution for lnc-MGAT5-5 Gene

Paralogs for lnc-MGAT5-5 Gene

No data available for Paralogs for lnc-MGAT5-5 Gene

Variants for lnc-MGAT5-5 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-MGAT5-5 Gene

Disorders for lnc-MGAT5-5 Gene

No disorders were found for lnc-MGAT5-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-MGAT5-5 Gene

Publications for lnc-MGAT5-5 Gene

No publications were found for lnc-MGAT5-5 Gene.

No data available for Mastermind for lnc-MGAT5-5 Gene

Products for lnc-MGAT5-5 Gene

Sources for lnc-MGAT5-5 Gene