Aliases for lnc-LDLR-2 Gene

Data sources for lnc-LDLR-2 Gene:

Subcategory (RNA class) for lnc-LDLR-2 Gene


Aliases for lnc-LDLR-2 Gene

No data available for External Ids for lnc-LDLR-2 Gene

Summaries for lnc-LDLR-2 Gene

GeneCards Summary for lnc-LDLR-2 Gene

lnc-LDLR-2 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for lnc-LDLR-2 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for lnc-LDLR-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for lnc-LDLR-2 Gene

Genomics for lnc-LDLR-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-LDLR-2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J010959 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 -49.7 -49663 4.9 TBP ZBTB10 SP1 MXD4 NR2C1 IKZF1 SMAD5 POLR2A BHLHE40 ELF1 SMARCA4 lnc-YIPF2-4 ILF3-DT AP1M2 lnc-LDLR-2 LDLR
GH19J010997 Enhancer 0.7 ENCODE 0.4 -13.3 -13345 1.1 KDM6A FOXA2 SMAD4 RXRA RARA ZBTB33 JUND KDM1A HNF4A FOXA1 SMARCA4 TIMM29 YIPF2 SPC24 ILF3-DT lnc-LDLR-2 LDLR
GH19J010979 Enhancer 0.9 Ensembl ENCODE 0.3 -31.3 -31306 2 IRF4 CTCF EBF1 SMC3 MAX SPI1 BHLHE40 INSM2 ELF1 IKZF1 SLC44A2 SMARCA4 lnc-LDLR-2 LDLR
GH19J010975 Enhancer 0.8 ENCODE 0.3 -35.1 -35068 3.1 ZEB1 FOXA2 SMAD4 SAP130 RARA TEAD3 KLF9 ZNF585B KLF16 FOXP1 ZNF441 ZNF491 ZNF627 ILF3-DT QTRT1 ZNF439 ILF3 KRI1 RPL18AP13 DNMT1
GH19J010968 Enhancer 0.8 Ensembl ENCODE 0.3 -43.1 -43076 1.7 CTCF EBF1 BHLHE40 ELF1 ZBTB33 NFATC1 IKZF1 HDGF BACH1 ESRRA ILF3-DT SMARCA4 lnc-LDLR-2 LDLR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-LDLR-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-LDLR-2 Gene

Latest Assembly
298 bases
Plus strand

Genomic View for lnc-LDLR-2 Gene

Genes around lnc-LDLR-2 on UCSC Golden Path with GeneCards custom track
lnc-LDLR-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-LDLR-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-LDLR-2 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-LDLR-2 Gene

Proteins for lnc-LDLR-2 Gene

Post-translational modifications for lnc-LDLR-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-LDLR-2 Gene

Domains & Families for lnc-LDLR-2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-LDLR-2 Gene

Function for lnc-LDLR-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-LDLR-2 Gene

Localization for lnc-LDLR-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-LDLR-2 Gene

Pathways & Interactions for lnc-LDLR-2 Gene

PathCards logo

SuperPathways for lnc-LDLR-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-LDLR-2 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-LDLR-2 Gene

Drugs & Compounds for lnc-LDLR-2 Gene

No Compound Related Data Available

Transcripts for lnc-LDLR-2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-LDLR-2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BBC2E_9606 lncRNA 297 2

LNCipedia: lnc-LDLR-2:1,


URS0001BCE479_9606 lncRNA 297 1

LncBook: HSALNT0255752,

lnc-LDLR-2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-LDLR-2 Gene

No ASD Table

Relevant External Links for lnc-LDLR-2 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for lnc-LDLR-2 Gene

Expression for lnc-LDLR-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-LDLR-2 Gene

Orthologs for lnc-LDLR-2 Gene

No data available for Orthologs and Evolution for lnc-LDLR-2 Gene

Paralogs for lnc-LDLR-2 Gene

No data available for Paralogs for lnc-LDLR-2 Gene

Variants for lnc-LDLR-2 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-LDLR-2 Gene

Disorders for lnc-LDLR-2 Gene

No disorders were found for lnc-LDLR-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-LDLR-2 Gene

Publications for lnc-LDLR-2 Gene

No publications were found for lnc-LDLR-2 Gene.

No data available for Mastermind for lnc-LDLR-2 Gene

Products for lnc-LDLR-2 Gene

Sources for lnc-LDLR-2 Gene