lnc-ITGB3BP-6 Gene (RNA Gene)

 

GC01M063690
GIFtS:
4

Aliases for lnc-ITGB3BP-6 Gene

Subcategory (RNA class) for lnc-ITGB3BP-6 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for lnc-ITGB3BP-6 Gene

  • Lnc-ITGB3BP-6 168
  • NONHSAG001709 92

No data available for External Ids for lnc-ITGB3BP-6 Gene

Summaries for lnc-ITGB3BP-6 Gene

GeneCards Summary for lnc-ITGB3BP-6 Gene

lnc-ITGB3BP-6 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-ITGB3BP-6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-ITGB3BP-6 Gene

Genomics for lnc-ITGB3BP-6 Gene

GeneHancer (GH) Regulatory Elements for lnc-ITGB3BP-6 Gene

Promoters and enhancers for lnc-ITGB3BP-6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J063691 Enhancer 0.9 Ensembl ENCODE 500.7 -1.0 -979 1.6 CTCF TCF7 FOXA1 RAD21 EP300 CTBP1 TRIM22 TBX3 SMC3 FOXA2 lnc-ITGB3BP-6 ROR1 LOC105378771 HSALNG0004130
GH01J063673 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 0.4 +16.1 16135 2.2 CTCF TCF12 NCOR1 JUND FOS ZIC2 KDM6A REST ZBTB25 RAD21 ROR1 LOC105378771 lnc-ITGB3BP-6
GH01J063697 Enhancer 0.8 Ensembl ENCODE 0.4 -7.8 -7779 2.8 TCF12 EP300 ESRRA BRCA1 FOSL2 CEBPB JUN ATF3 FOSL1 TAL1 lnc-ITGB3BP-6 HSALNG0004130 LOC105378771
GH01J063703 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.4 -12.9 -12878 3.8 FOSL2 POLR2A ZFHX2 FOS SMARCA4 ELF3 EGR2 ZNF362 ZNF384 HNF1A ROR1 ITGB3BP PGM1 lnc-ITGB3BP-6 HSALNG0004130 LOC105378771
GH01J063701 Enhancer 0.9 Ensembl ENCODE 0.4 -10.0 -10002 0.9 TCF12 FOXA2 USF1 POLR2A FOSL2 ATF3 NR3C1 FOXP1 SMAD4 FOXA1 ROR1 ITGB3BP PGM1 lnc-ITGB3BP-6 HSALNG0004130 LOC105378771
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-ITGB3BP-6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-ITGB3BP-6 Gene

Genomic Locations for lnc-ITGB3BP-6 Gene
chr1:63,690,581-63,691,222
(GRCh38/hg38)
Size:
642 bases
Orientation:
Minus strand

Genomic View for lnc-ITGB3BP-6 Gene

Genes around lnc-ITGB3BP-6 on UCSC Golden Path with GeneCards custom track

lnc-ITGB3BP-6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-ITGB3BP-6 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-ITGB3BP-6 Gene

Proteins for lnc-ITGB3BP-6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for lnc-ITGB3BP-6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-ITGB3BP-6 Gene

Domains & Families for lnc-ITGB3BP-6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-ITGB3BP-6 Gene

Function for lnc-ITGB3BP-6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

miRNA for lnc-ITGB3BP-6 Gene

miRTarBase miRNAs that target lnc-ITGB3BP-6

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for lnc-ITGB3BP-6 Gene

Localization for lnc-ITGB3BP-6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-ITGB3BP-6 Gene

Pathways & Interactions for lnc-ITGB3BP-6 Gene

PathCards logo

SuperPathways for lnc-ITGB3BP-6 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for lnc-ITGB3BP-6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-ITGB3BP-6 Gene

Drugs & Compounds for lnc-ITGB3BP-6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for lnc-ITGB3BP-6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for lnc-ITGB3BP-6 Gene

1 RNACentral transcripts :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-ITGB3BP-6 Gene

No ASD Table

Relevant External Links for lnc-ITGB3BP-6 Gene

GeneLoc Exon Structure for
lnc-ITGB3BP-6

Expression for lnc-ITGB3BP-6 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-ITGB3BP-6 Gene

Orthologs for lnc-ITGB3BP-6 Gene

No data available for Orthologs and Evolution for lnc-ITGB3BP-6 Gene

Paralogs for lnc-ITGB3BP-6 Gene

No data available for Paralogs for lnc-ITGB3BP-6 Gene

Variants for lnc-ITGB3BP-6 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-ITGB3BP-6 Gene

Disorders for lnc-ITGB3BP-6 Gene

No disorders were found for lnc-ITGB3BP-6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-ITGB3BP-6 Gene

Publications for lnc-ITGB3BP-6 Gene

No publications were found for lnc-ITGB3BP-6 Gene.

No data available for Mastermind for lnc-ITGB3BP-6 Gene

Products for lnc-ITGB3BP-6 Gene

Sources for lnc-ITGB3BP-6 Gene