Aliases for lnc-IFI27L2-3 Gene

Data sources for lnc-IFI27L2-3 Gene:

Subcategory (RNA class) for lnc-IFI27L2-3 Gene

lncRNA

Aliases for lnc-IFI27L2-3 Gene

No data available for External Ids for lnc-IFI27L2-3 Gene

Summaries for lnc-IFI27L2-3 Gene

GeneCards Summary for lnc-IFI27L2-3 Gene

lnc-IFI27L2-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-IFI27L2-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-IFI27L2-3 Gene

Genomics for lnc-IFI27L2-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-IFI27L2-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J094056 Enhancer 1 Ensembl ENCODE 0.7 -2.5 -2463 4.4 BCL11A CEBPA HOMEZ KDM6A FOXA2 IRF4 SMAD4 SAP130 MIER3 RXRA DDX24 IFI27L1 IFI27 PPP4R4 IFI27L2 lnc-IFI27L2-3 piR-50852-055 OTUB2
GH14J094025 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +28.2 28221 4.3 ZBTB10 SP1 MNT MBD2 ZNF217 ZBTB7B ZIC2 HOMEZ ZNF610 THAP11 OTUB2 HSALNG0103342 BTBD7 DDX24 CCDC197 ASB2 IFI27L2 IFI27L1 IFI27 lnc-IFI27L2-3
GH14J094065 Enhancer 1 Ensembl ENCODE 0.4 -10.4 -10438 4.4 FEZF1 IKZF1 FOXA2 ZNF639 SAP130 ZNF341 RARA ZNF843 SP2 JUND DDX24 IFI27 piR-50852-055 lnc-IFI27L2-3 OTUB2
GH14J094036 Enhancer 0.9 Ensembl ENCODE 0.4 +19.5 19463 0.6 ZNF217 CTCF ZIC2 REST TRIM22 EBF1 SMC3 RAD21 CTBP1 TEAD3 DDX24 IFI27L1 IFI27L2 IFI27 OTUB2 HSALNG0103342 lnc-IFI27L2-3
GH14J094053 Enhancer 0.4 Ensembl 0.7 +4.3 4262 0.2 ZIC2 POLR2A EGR2 ZFHX2 DDX24 lnc-IFI27L2-3 OTUB2 HSALNG0103342
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-IFI27L2-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-IFI27L2-3 Gene

Latest Assembly
chr14:94,050,920-94,056,163
(GRCh38/hg38)
Size:
5,244 bases
Orientation:
Minus strand

Genomic View for lnc-IFI27L2-3 Gene

Genes around lnc-IFI27L2-3 on UCSC Golden Path with GeneCards custom track
lnc-IFI27L2-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-IFI27L2-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-IFI27L2-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-IFI27L2-3 Gene

Proteins for lnc-IFI27L2-3 Gene

Post-translational modifications for lnc-IFI27L2-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-IFI27L2-3 Gene

Domains & Families for lnc-IFI27L2-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-IFI27L2-3 Gene

Function for lnc-IFI27L2-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-IFI27L2-3 Gene

Localization for lnc-IFI27L2-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-IFI27L2-3 Gene

Pathways & Interactions for lnc-IFI27L2-3 Gene

PathCards logo

SuperPathways for lnc-IFI27L2-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-IFI27L2-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-IFI27L2-3 Gene

Drugs & Compounds for lnc-IFI27L2-3 Gene

No Compound Related Data Available

Transcripts for lnc-IFI27L2-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-IFI27L2-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B8E98_9606 lncRNA 277 3

LncBook: HSALNT0215003,

LNCipedia: lnc-IFI27L2-3:3,

NONCODE: NONHSAT039369.2,

URS00008C0C44_9606 lncRNA 620 1

LNCipedia: lnc-IFI27L2-3:2,

URS00008BCD4F_9606 lncRNA 486 1

LNCipedia: lnc-IFI27L2-3:1,

lnc-IFI27L2-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-IFI27L2-3 Gene

No ASD Table

Relevant External Links for lnc-IFI27L2-3 Gene

GeneLoc Exon Structure for
lnc-IFI27L2-3

No data available for mRNA/cDNA for lnc-IFI27L2-3 Gene

Expression for lnc-IFI27L2-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-IFI27L2-3 Gene

Orthologs for lnc-IFI27L2-3 Gene

No data available for Orthologs and Evolution for lnc-IFI27L2-3 Gene

Paralogs for lnc-IFI27L2-3 Gene

No data available for Paralogs for lnc-IFI27L2-3 Gene

Variants for lnc-IFI27L2-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-IFI27L2-3 Gene

Disorders for lnc-IFI27L2-3 Gene

No disorders were found for lnc-IFI27L2-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-IFI27L2-3 Gene

Publications for lnc-IFI27L2-3 Gene

No publications were found for lnc-IFI27L2-3 Gene.

No data available for Mastermind for lnc-IFI27L2-3 Gene

Products for lnc-IFI27L2-3 Gene

Sources for lnc-IFI27L2-3 Gene