lnc-IER5-4 Gene (RNA Gene)

 

GC01P181059
GIFtS:
4
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Aliases for lnc-IER5-4 Gene

Data sources for lnc-IER5-4 Gene:

RNA type for lnc-IER5-4 Gene

lncRNA

Aliases for lnc-IER5-4 Gene

No data available for External Ids for lnc-IER5-4 Gene

Summaries for lnc-IER5-4 Gene

GeneCards Summary for lnc-IER5-4 Gene

lnc-IER5-4 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-IER5-4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-IER5-4 Gene

Genomics for lnc-IER5-4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-IER5-4 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J181061 Enhancer 1.1 FANTOM5 ENCODE 0.7 +3.6 3597 2.9 SP1 ZNF207 POLR2A BCL11A ZNF592 SIN3A TRIM22 GABPA IRF4 GABPB1 LHX4 IER5 lnc-IER5-4 lnc-STX6-8 MR1
GH01J181073 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.3 14267 1 JUND MAX EP300 RFX5 STAT3 USF2 SOX5 NR2F6 BHLHE40 ZBTB40 IER5 lnc-STX6-8 lnc-IER5-4 MR1
GH01J181077 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +18.3 18267 4.2 JUND EBF1 BATF MAFK JUNB MEIS2 ZNF660 NFE2L2 USF2 PKNOX1 IER5 lnc-STX6-8 lnc-IER5-4 MR1
GH01J181084 Enhancer 0.9 ENCODE 0.3 +25.2 25160 0.9 BCLAF1 ZNF207 ZNF654 MYC ZNF600 CTCF REST ZNF592 DEK TARDBP LHX4 ENSG00000251520 IER5 lnc-STX6-8 lnc-IER5-4 MR1
GH01J181081 Enhancer 0.3 Ensembl 0.4 +22.2 22167 0.4 ZNF561 MAFK lnc-STX6-8 IER5 lnc-IER5-4 MR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-IER5-4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-IER5-4 Gene

Latest Assembly
chr1:181,059,434-181,061,937
(GRCh38/hg38)
Size:
2,504 bases
Orientation:
Plus strand

Genomic View for lnc-IER5-4 Gene

Genes around lnc-IER5-4 on UCSC Golden Path with GeneCards custom track
lnc-IER5-4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-IER5-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-IER5-4 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-IER5-4 Gene

Proteins for lnc-IER5-4 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for lnc-IER5-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-IER5-4 Gene

Domains & Families for lnc-IER5-4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-IER5-4 Gene

Function for lnc-IER5-4 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-IER5-4 Gene

Localization for lnc-IER5-4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-IER5-4 Gene

Pathways & Interactions for lnc-IER5-4 Gene

PathCards logo

SuperPathways for lnc-IER5-4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-IER5-4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-IER5-4 Gene

Drugs & Compounds for lnc-IER5-4 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for lnc-IER5-4 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-IER5-4 Gene

GeneCaRNA:The Human ncRNA Database 2021 Publication

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008B5B80_9606 lncRNA 2503 2

LNCipedia: lnc-IER5-4:1,

NONCODE: NONHSAT008281.2,

URS0001BEADB7_9606 lncRNA 2503 1

LncBook: HSALNT0018294,

lnc-IER5-4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-IER5-4 Gene

No ASD Table

Relevant External Links for lnc-IER5-4 Gene

GeneLoc Exon Structure for
lnc-IER5-4

No data available for mRNA/cDNA for lnc-IER5-4 Gene

Expression for lnc-IER5-4 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-IER5-4 Gene

Orthologs for lnc-IER5-4 Gene

No data available for Orthologs and Evolution for lnc-IER5-4 Gene

Paralogs for lnc-IER5-4 Gene

No data available for Paralogs for lnc-IER5-4 Gene

Variants for lnc-IER5-4 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-IER5-4 Gene

Disorders for lnc-IER5-4 Gene

No disorders were found for lnc-IER5-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-IER5-4 Gene

Publications for lnc-IER5-4 Gene

No publications were found for lnc-IER5-4 Gene.

No data available for Mastermind for lnc-IER5-4 Gene

Products for lnc-IER5-4 Gene

Sources for lnc-IER5-4 Gene