Aliases for lnc-GATA3-24 Gene

Data sources for lnc-GATA3-24 Gene:

RNA type for lnc-GATA3-24 Gene

lncRNA

Aliases for lnc-GATA3-24 Gene

No data available for External Ids for lnc-GATA3-24 Gene

Summaries for lnc-GATA3-24 Gene

GeneCards Summary for lnc-GATA3-24 Gene

lnc-GATA3-24 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-GATA3-24 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-GATA3-24 Gene

Genomics for lnc-GATA3-24 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-GATA3-24 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J008869 Enhancer 0.3 dbSUPER 250.7 +0.4 434 1.1 CHD1 HSALNG0076077-002 lnc-GATA3-24 piR-43099-035 piR-39488-032 piR-55654-033 piR-55655-035 piR-43583-035 piR-45471-035 piR-56022-034 piR-45504-034
GH10J008874 Enhancer 0.8 Ensembl dbSUPER 0.7 +4.1 4125 0.5 MBD2 CUX1 ZNF316 TCF7L2 CTCF ZNF217 PKNOX1 DPF2 NCOA3 FOS HSALNG0076077-002 lnc-GATA3-24 lnc-GATA3-16 lnc-GATA3-17 LINC02676 LOC101928272 GATA3
GH10J008873 Enhancer 0.6 ENCODE dbSUPER 0.7 +3.6 3576 0.2 ZNF654 RAD21 CTCF SMC3 HSALNG0076077-002 lnc-GATA3-24 lnc-GATA3-16 lnc-GATA3-17 LINC02676 LOC101928272 GATA3
GH10J008872 Enhancer 0.4 Ensembl dbSUPER 0.7 +3.1 3064 0.4 CTCF HSALNG0076077-002 lnc-GATA3-24 lnc-GATA3-16 lnc-GATA3-17 LINC02676 LOC101928272 GATA3
GH10J008923 Enhancer 0.3 Ensembl 0.2 +53.4 53364 0.2 POLR2A lnc-GATA3-17 lnc-GATA3-24 LOC101928272 GATA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-GATA3-24 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-GATA3-24 Gene

Latest Assembly
chr10:8,869,937-8,870,995
(GRCh38/hg38)
Size:
1,059 bases
Orientation:
Plus strand

Genomic View for lnc-GATA3-24 Gene

Genes around lnc-GATA3-24 on UCSC Golden Path with GeneCards custom track
lnc-GATA3-24 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-GATA3-24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-GATA3-24 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-GATA3-24 Gene

Proteins for lnc-GATA3-24 Gene

Post-translational modifications for lnc-GATA3-24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-GATA3-24 Gene

Domains & Families for lnc-GATA3-24 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-GATA3-24 Gene

Function for lnc-GATA3-24 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-GATA3-24 Gene

Localization for lnc-GATA3-24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-GATA3-24 Gene

Pathways & Interactions for lnc-GATA3-24 Gene

PathCards logo

SuperPathways for lnc-GATA3-24 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-GATA3-24 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-GATA3-24 Gene

Drugs & Compounds for lnc-GATA3-24 Gene

No Compound Related Data Available

Transcripts for lnc-GATA3-24 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-GATA3-24 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000D5CFBD_9606 lncRNA 1059 1

LNCipedia: lnc-GATA3-24:1,

URS0001BCC0D6_9606 lncRNA 1058 1

LncBook: HSALNT0158706,

lnc-GATA3-24 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-GATA3-24 Gene

No ASD Table

Relevant External Links for lnc-GATA3-24 Gene

GeneLoc Exon Structure for
lnc-GATA3-24

No data available for mRNA/cDNA for lnc-GATA3-24 Gene

Expression for lnc-GATA3-24 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-GATA3-24 Gene

Orthologs for lnc-GATA3-24 Gene

No data available for Orthologs and Evolution for lnc-GATA3-24 Gene

Paralogs for lnc-GATA3-24 Gene

No data available for Paralogs for lnc-GATA3-24 Gene

Variants for lnc-GATA3-24 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-GATA3-24 Gene

Disorders for lnc-GATA3-24 Gene

No disorders were found for lnc-GATA3-24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-GATA3-24 Gene

Publications for lnc-GATA3-24 Gene

No publications were found for lnc-GATA3-24 Gene.

No data available for Mastermind for lnc-GATA3-24 Gene

Products for lnc-GATA3-24 Gene

Sources for lnc-GATA3-24 Gene