lnc-CXCL12-5 Gene (RNA Gene)

 

GC10M044415
GIFtS:
2
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Aliases for lnc-CXCL12-5 Gene

Subcategory (RNA class) for lnc-CXCL12-5 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-CXCL12-5 Gene

  • NONHSAG005746.2 91
  • Lnc-CXCL12-5 165

No data available for External Ids for lnc-CXCL12-5 Gene

Summaries for lnc-CXCL12-5 Gene

GeneCards Summary for lnc-CXCL12-5 Gene

lnc-CXCL12-5 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-CXCL12-5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-CXCL12-5 Gene

Genomics for lnc-CXCL12-5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-CXCL12-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J044415 Enhancer 0.5 Ensembl ENCODE 600.7 -1.6 -1572 1.6 CEBPB SPI1 RPL9P21 lnc-CXCL12-5 CXCL12 lnc-C10orf142-3 TMEM72
GH10J044400 Enhancer 0.6 Ensembl ENCODE 0.4 +14.4 14352 1.6 TEAD4 NANOG SP1 POU5F1 TMEM72-AS1 CXCL12 LOC107984179 lnc-CXCL12-5 TMEM72
GH10J044390 Enhancer 0.6 Ensembl 0.4 +24.3 24252 0.6 ZIC2 SP1 CEBPA CEBPB GABPA TEAD1 RAD21 ZNF18 HNF4A RXRA LOC107984179 CXCL12 lnc-CXCL12-5 TMEM72
GH10J044399 Enhancer 0.4 Ensembl CraniofacialAtlas 0.4 +15.8 15800 0.8 RAD21 ENSG00000227683 LOC107984179 CXCL12 lnc-CXCL12-5 TMEM72
GH10J044393 Enhancer 0.5 Ensembl 0.4 +21.7 21652 0.2 ZNF561 OSR2 ZNF580 SCRT1 ZNF843 GLIS1 LOC107984179 CXCL12 lnc-CXCL12-5 TMEM72
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-CXCL12-5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-CXCL12-5 Gene

Genomic Locations for lnc-CXCL12-5 Gene
chr10:44,414,649-44,415,153
(GRCh38/hg38)
Size:
505 bases
Orientation:
Minus strand

Genomic View for lnc-CXCL12-5 Gene

Genes around lnc-CXCL12-5 on UCSC Golden Path with GeneCards custom track
lnc-CXCL12-5 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-CXCL12-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-CXCL12-5 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-CXCL12-5 Gene

Proteins for lnc-CXCL12-5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for lnc-CXCL12-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-CXCL12-5 Gene

Domains & Families for lnc-CXCL12-5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-CXCL12-5 Gene

Function for lnc-CXCL12-5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-CXCL12-5 Gene

Localization for lnc-CXCL12-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-CXCL12-5 Gene

Pathways & Interactions for lnc-CXCL12-5 Gene

PathCards logo

SuperPathways for lnc-CXCL12-5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-CXCL12-5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-CXCL12-5 Gene

Drugs & Compounds for lnc-CXCL12-5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for lnc-CXCL12-5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-CXCL12-5 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B88E1_9606 lncRNA 505 2

LNCipedia: lnc-CXCL12-5:1,

NONCODE: NONHSAT013034.2,

lnc-CXCL12-5 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-CXCL12-5 Gene

No ASD Table

Relevant External Links for lnc-CXCL12-5 Gene

GeneLoc Exon Structure for
lnc-CXCL12-5

No data available for mRNA/cDNA for lnc-CXCL12-5 Gene

Expression for lnc-CXCL12-5 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-CXCL12-5 Gene

Orthologs for lnc-CXCL12-5 Gene

No data available for Orthologs and Evolution for lnc-CXCL12-5 Gene

Paralogs for lnc-CXCL12-5 Gene

No data available for Paralogs for lnc-CXCL12-5 Gene

Variants for lnc-CXCL12-5 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-CXCL12-5 Gene

Disorders for lnc-CXCL12-5 Gene

No disorders were found for lnc-CXCL12-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-CXCL12-5 Gene

Publications for lnc-CXCL12-5 Gene

No publications were found for lnc-CXCL12-5 Gene.

No data available for Mastermind for lnc-CXCL12-5 Gene

Products for lnc-CXCL12-5 Gene

Sources for lnc-CXCL12-5 Gene