Aliases for lnc-CSTB-3 Gene

Subcategory (RNA class) for lnc-CSTB-3 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-CSTB-3 Gene

  • NONHSAG032999.2 91
  • Lnc-CSTB-3 165

Previous GeneCards Identifiers for lnc-CSTB-3 Gene

  • GC21M043858

No data available for External Ids for lnc-CSTB-3 Gene

Summaries for lnc-CSTB-3 Gene

GeneCards Summary for lnc-CSTB-3 Gene

lnc-CSTB-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-CSTB-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-CSTB-3 Gene

Genomics for lnc-CSTB-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-CSTB-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043854 Promoter/Enhancer 1.3 Ensembl ENCODE 600.7 +1.2 1230 1.5 ZBTB33 PRDM10 LEF1 IKZF1 JUND PKNOX1 REST IKZF2 ZNF740 POLR2A MYL6P1 lnc-CSTB-3 UBE2G2 U2AF1 PWP2 WDR4 RRP1B AATBC AGPAT3 RF00017-3727
GH21J043839 Enhancer 0.8 Ensembl ENCODE 0.4 +17.3 17341 0.8 BACH1 RUNX3 GATAD2B TCF12 BCL11A ARNT IKZF1 NR2F1 CEBPB TBX21 AGPAT3 AATBC RRP1 TMEM97P1 RNU6-859P PDXK RF00017-3727 lnc-CSTB-3
GH21J043849 Enhancer 0.6 Ensembl 0.4 +5.8 5841 1.8 TEAD4 CBX3 TRIM28 TRIM24 ZNF189 ZNF592 SPI1 ZSCAN5A CHAMP1 ID3 RNU6-859P AATBC AGPAT3 lnc-CSTB-3 RF00017-3727 RRP1
GH21J043842 Enhancer 0.6 Ensembl 0.4 +13.3 13342 2 PRDM1 CEBPA ZNF524 RELB ASH2L ZNF707 NBN JUNB BATF CEBPB AATBC AGPAT3 PWP2 RNU6-859P CSTB TRAPPC10 WDR4 RRP1B ENSG00000184441 RF00017-3727
GH21J043831 Enhancer 0.6 Ensembl 0.3 +25.1 25141 1.6 PHF21A PKNOX1 PBX2 CEBPA ZNF18 HDAC2 HNF4A CEBPB KDM1A ZBTB33 RF00017-3727 CSTB RRP1 AGPAT3 lnc-CSTB-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-CSTB-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-CSTB-3 Gene

Genomic Locations for lnc-CSTB-3 Gene
chr21:43,855,890-43,856,342
(GRCh38/hg38)
Size:
453 bases
Orientation:
Minus strand

Genomic View for lnc-CSTB-3 Gene

Genes around lnc-CSTB-3 on UCSC Golden Path with GeneCards custom track
lnc-CSTB-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-CSTB-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-CSTB-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-CSTB-3 Gene

Proteins for lnc-CSTB-3 Gene

Post-translational modifications for lnc-CSTB-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-CSTB-3 Gene

Domains & Families for lnc-CSTB-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-CSTB-3 Gene

Function for lnc-CSTB-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-CSTB-3 Gene

Localization for lnc-CSTB-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-CSTB-3 Gene

Pathways & Interactions for lnc-CSTB-3 Gene

PathCards logo

SuperPathways for lnc-CSTB-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-CSTB-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-CSTB-3 Gene

Drugs & Compounds for lnc-CSTB-3 Gene

No Compound Related Data Available

Transcripts for lnc-CSTB-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-CSTB-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C380B_9606 lncRNA 453 2

LNCipedia: lnc-CSTB-3:1,

NONCODE: NONHSAT082462.2,

lnc-CSTB-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-CSTB-3 Gene

No ASD Table

Relevant External Links for lnc-CSTB-3 Gene

GeneLoc Exon Structure for
lnc-CSTB-3

No data available for mRNA/cDNA for lnc-CSTB-3 Gene

Expression for lnc-CSTB-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-CSTB-3 Gene

Orthologs for lnc-CSTB-3 Gene

No data available for Orthologs and Evolution for lnc-CSTB-3 Gene

Paralogs for lnc-CSTB-3 Gene

No data available for Paralogs for lnc-CSTB-3 Gene

Variants for lnc-CSTB-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-CSTB-3 Gene

Disorders for lnc-CSTB-3 Gene

No disorders were found for lnc-CSTB-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-CSTB-3 Gene

Publications for lnc-CSTB-3 Gene

No publications were found for lnc-CSTB-3 Gene.

No data available for Mastermind for lnc-CSTB-3 Gene

Products for lnc-CSTB-3 Gene

Sources for lnc-CSTB-3 Gene