Aliases for lnc-CDH20-3 Gene

Data sources for lnc-CDH20-3 Gene:

RNA type for lnc-CDH20-3 Gene

lncRNA

Aliases for lnc-CDH20-3 Gene

No data available for External Ids for lnc-CDH20-3 Gene

Summaries for lnc-CDH20-3 Gene

GeneCards Summary for lnc-CDH20-3 Gene

lnc-CDH20-3 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-CDH20-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-CDH20-3 Gene

Genomics for lnc-CDH20-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-CDH20-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J061568 Enhancer 0.6 Ensembl ENCODE 250.7 +0.2 223 1.7 JUND POLR2A EP300 FOS CEBPB HSALNG0121938 lnc-CDH20-3 CDH20 RNF152
GH18J061581 Promoter/Enhancer 1 ENCODE CraniofacialAtlas 0.4 +12.8 12761 1.3 ZNF654 REST CTCF ZFP64 RAD21 SMC3 YY1 ZFP37 TAF1 KLF1 ENSG00000267316 HSALNG0121938 lnc-CDH20-3 ENSG00000267279 CDH20 RNF152
GH18J061604 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +37.0 37035 3.3 IKZF1 JUND POLR2A ETS1 TAL1 TCF12 TEAD4 GLIS1 BHLHE40 MEIS2 ENSG00000267279 RNF152 ENSG00000267316 lnc-CDH20-3 HSALNG0121938 ENSG00000267175 CDH20
GH18J061586 Enhancer 0.5 Ensembl 0.4 +19.0 19027 3.4 ATF2 JUND ATF4 JUN CEBPB HLF ATF7 ENSG00000267279 ENSG00000267316 lnc-CDH20-3 HSALNG0121938 CDH20 RNF152
GH18J061575 Enhancer 0.3 Ensembl 0.4 +6.2 6227 0.6 POLR2A USF1 ENSG00000267316 HSALNG0121938 lnc-CDH20-3 CDH20 RNF152
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-CDH20-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-CDH20-3 Gene

Latest Assembly
chr18:61,569,474-61,606,574
(GRCh38/hg38)
Size:
37,101 bases
Orientation:
Plus strand

Genomic View for lnc-CDH20-3 Gene

Genes around lnc-CDH20-3 on UCSC Golden Path with GeneCards custom track
lnc-CDH20-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-CDH20-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-CDH20-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-CDH20-3 Gene

Proteins for lnc-CDH20-3 Gene

Post-translational modifications for lnc-CDH20-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-CDH20-3 Gene

Domains & Families for lnc-CDH20-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-CDH20-3 Gene

Function for lnc-CDH20-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-CDH20-3 Gene

Localization for lnc-CDH20-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-CDH20-3 Gene

Pathways & Interactions for lnc-CDH20-3 Gene

PathCards logo

SuperPathways for lnc-CDH20-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-CDH20-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-CDH20-3 Gene

Drugs & Compounds for lnc-CDH20-3 Gene

No Compound Related Data Available

Transcripts for lnc-CDH20-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-CDH20-3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BECAB_9606 lncRNA 1839 3

LncBook: HSALNT0252120,

LNCipedia: lnc-CDH20-3:1,

NONCODE: NONHSAT059598.2,

URS0001BF6AAD_9606 lncRNA 4984 1

LncBook: HSALNT0252118,

URS0001BD725E_9606 lncRNA 1308 1

LncBook: HSALNT0252117,

lnc-CDH20-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-CDH20-3 Gene

No ASD Table

Relevant External Links for lnc-CDH20-3 Gene

GeneLoc Exon Structure for
lnc-CDH20-3

No data available for mRNA/cDNA for lnc-CDH20-3 Gene

Expression for lnc-CDH20-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-CDH20-3 Gene

Orthologs for lnc-CDH20-3 Gene

No data available for Orthologs and Evolution for lnc-CDH20-3 Gene

Paralogs for lnc-CDH20-3 Gene

No data available for Paralogs for lnc-CDH20-3 Gene

Variants for lnc-CDH20-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-CDH20-3 Gene

Disorders for lnc-CDH20-3 Gene

No disorders were found for lnc-CDH20-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-CDH20-3 Gene

Publications for lnc-CDH20-3 Gene

No publications were found for lnc-CDH20-3 Gene.

No data available for Mastermind for lnc-CDH20-3 Gene

Products for lnc-CDH20-3 Gene

Sources for lnc-CDH20-3 Gene