Aliases for lnc-CBX4-4 Gene

Data sources for lnc-CBX4-4 Gene:

RNA type for lnc-CBX4-4 Gene

lncRNA

Aliases for lnc-CBX4-4 Gene

No data available for External Ids for lnc-CBX4-4 Gene

Summaries for lnc-CBX4-4 Gene

GeneCards Summary for lnc-CBX4-4 Gene

lnc-CBX4-4 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-CBX4-4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-CBX4-4 Gene

Genomics for lnc-CBX4-4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-CBX4-4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J079937 Enhancer 0.8 ENCODE CraniofacialAtlas dbSUPER 250.7 +0.8 776 1 RBM22 PAF1 EGR2 ZBTB17 GLIS2 lnc-CBX4-4 piR-41247 CBX4 TBC1D16
GH17J079938 Enhancer 0.7 ENCODE dbSUPER 250.7 -0.4 -419 0.1 FOXA2 SMAD4 SAP130 TFAP4 RXRB PPARG RAD21 FOXA3 lnc-CBX4-4 HSALNG0119151-001 HSALNG0119151-002 CBX4 TBC1D16
GH17J079936 Enhancer 0.6 ENCODE 250.7 +1.8 1761 0.2 SSRP1 FEZF1 BHLHE40 ZNF2 IKZF1 SP7 ZNF548 ZSCAN4 PATZ1 GLIS2 lnc-CBX4-4 piR-41247 EIF4A3 CBX4 TBC1D16
GH17J079923 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.8 9793 11.1 ZNF654 ZNF600 SSRP1 ZMYM3 KLF9 CEBPA ZIC2 CHD4 REST KLF11 LINC01979 EIF4A3 ENGASE TBC1D16 CBX2 HSALNG0119149 LINC01978 lnc-CBX4-4 CBX4
GH17J079942 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.7 -3723 4.4 MBD2 ELF1 CTBP1 ZNF585B RBM22 JUND SRF ATF2 NFIB NCOA3 HSALNG0119151-001 HSALNG0119151-002 CCDC40 CBX4 RNF213-AS1 ENDOV TBC1D16 SGSH lnc-CBX4-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-CBX4-4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-CBX4-4 Gene

Latest Assembly
chr17:79,932,343-79,938,478
(GRCh38/hg38)
Size:
6,136 bases
Orientation:
Minus strand

Genomic View for lnc-CBX4-4 Gene

Genes around lnc-CBX4-4 on UCSC Golden Path with GeneCards custom track
lnc-CBX4-4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-CBX4-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-CBX4-4 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-CBX4-4 Gene

Proteins for lnc-CBX4-4 Gene

Post-translational modifications for lnc-CBX4-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-CBX4-4 Gene

Domains & Families for lnc-CBX4-4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-CBX4-4 Gene

Function for lnc-CBX4-4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-CBX4-4 Gene

Localization for lnc-CBX4-4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-CBX4-4 Gene

Pathways & Interactions for lnc-CBX4-4 Gene

PathCards logo

SuperPathways for lnc-CBX4-4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-CBX4-4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-CBX4-4 Gene

Drugs & Compounds for lnc-CBX4-4 Gene

No Compound Related Data Available

Transcripts for lnc-CBX4-4 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-CBX4-4 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008B5BA6_9606 lncRNA 6135 2

LNCipedia: lnc-CBX4-4:1,

NONCODE: NONHSAT056324.2,

URS00008BEF59_9606 lncRNA 443 1

LNCipedia: lnc-CBX4-4:2,

URS0001BE297B_9606 lncRNA 442 1

LncBook: HSALNT0246024,

lnc-CBX4-4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-CBX4-4 Gene

No ASD Table

Relevant External Links for lnc-CBX4-4 Gene

GeneLoc Exon Structure for
lnc-CBX4-4

No data available for mRNA/cDNA for lnc-CBX4-4 Gene

Expression for lnc-CBX4-4 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-CBX4-4 Gene

Orthologs for lnc-CBX4-4 Gene

No data available for Orthologs and Evolution for lnc-CBX4-4 Gene

Paralogs for lnc-CBX4-4 Gene

No data available for Paralogs for lnc-CBX4-4 Gene

Variants for lnc-CBX4-4 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-CBX4-4 Gene

Disorders for lnc-CBX4-4 Gene

No disorders were found for lnc-CBX4-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-CBX4-4 Gene

Publications for lnc-CBX4-4 Gene

No publications were found for lnc-CBX4-4 Gene.

No data available for Mastermind for lnc-CBX4-4 Gene

Products for lnc-CBX4-4 Gene

Sources for lnc-CBX4-4 Gene