Aliases for lnc-C9orf43-6 Gene

Subcategory (RNA class) for lnc-C9orf43-6 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for lnc-C9orf43-6 Gene

  • Lnc-C9orf43-6 165

Previous GeneCards Identifiers for lnc-C9orf43-6 Gene

  • GC09P114463
  • GC09P114661

No data available for External Ids for lnc-C9orf43-6 Gene

Summaries for lnc-C9orf43-6 Gene

GeneCards Summary for lnc-C9orf43-6 Gene

lnc-C9orf43-6 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-C9orf43-6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-C9orf43-6 Gene

Genomics for lnc-C9orf43-6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-C9orf43-6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J113563 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.4 449 3.1 HNRNPL ZBTB33 IKZF1 JUND MTA2 ZIC2 PKNOX1 POLR2A MTA1 REST RGS3 lnc-C9orf43-6 C9orf43 RNF183 POLE3 CDC26 PRPF4 ALAD ENSG00000237073 ZNF618
GH09J113562 Enhancer 0.4 dbSUPER 600.7 -1.9 -1907 0.6 ZNF600 BCOR SMARCA5 ZMYM3 lnc-C9orf43-6 C9orf43 RNF183 POLE3 CDC26 PRPF4 RF00017-7842 RGS3 ZNF618
GH09J113564 Enhancer 0.2 dbSUPER 600.7 -1.4 -1413 0.3 lnc-C9orf43-6 C9orf43 RNF183 POLE3 CDC26 PRPF4 RF00017-7842 RGS3 ZNF618
GH09J113577 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.2 15166 6.3 SP1 HNRNPL PRDM10 IKZF1 POLR2A BACH1 TARDBP JUND FOXA1 LARP7 RGS3 C9orf43 POLE3 ALAD RNF183 ENSG00000237073 lnc-C9orf43-6 ZNF618
GH09J113567 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +3.6 3587 1.9 PRDM10 ELF4 ZKSCAN1 ZNF366 NFIA ZBTB40 C9orf43 RNF183 POLE3 CDC26 PRPF4 lnc-C9orf43-6 ENSG00000237073 RGS3 ZNF618
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-C9orf43-6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-C9orf43-6 Gene

Genomic Locations for lnc-C9orf43-6 Gene
chr9:113,565,057-113,582,242
(GRCh38/hg38)
Size:
17,186 bases
Orientation:
Plus strand

Genomic View for lnc-C9orf43-6 Gene

Genes around lnc-C9orf43-6 on UCSC Golden Path with GeneCards custom track
lnc-C9orf43-6 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-C9orf43-6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-C9orf43-6 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-C9orf43-6 Gene

Proteins for lnc-C9orf43-6 Gene

Post-translational modifications for lnc-C9orf43-6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-C9orf43-6 Gene

Domains & Families for lnc-C9orf43-6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-C9orf43-6 Gene

Function for lnc-C9orf43-6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-C9orf43-6 Gene

Localization for lnc-C9orf43-6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-C9orf43-6 Gene

Pathways & Interactions for lnc-C9orf43-6 Gene

PathCards logo

SuperPathways for lnc-C9orf43-6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-C9orf43-6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-C9orf43-6 Gene

Drugs & Compounds for lnc-C9orf43-6 Gene

No Compound Related Data Available

Transcripts for lnc-C9orf43-6 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-C9orf43-6 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BA7A8_9606 lncRNA 671 1

LNCipedia: lnc-C9orf43-6:2,

URS00008B8E02_9606 lncRNA 530 1

LNCipedia: lnc-C9orf43-6:1,

lnc-C9orf43-6 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-C9orf43-6 Gene

No ASD Table

Relevant External Links for lnc-C9orf43-6 Gene

GeneLoc Exon Structure for
lnc-C9orf43-6

No data available for mRNA/cDNA for lnc-C9orf43-6 Gene

Expression for lnc-C9orf43-6 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-C9orf43-6 Gene

Orthologs for lnc-C9orf43-6 Gene

No data available for Orthologs and Evolution for lnc-C9orf43-6 Gene

Paralogs for lnc-C9orf43-6 Gene

No data available for Paralogs for lnc-C9orf43-6 Gene

Variants for lnc-C9orf43-6 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-C9orf43-6 Gene

Disorders for lnc-C9orf43-6 Gene

No disorders were found for lnc-C9orf43-6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-C9orf43-6 Gene

Publications for lnc-C9orf43-6 Gene

No publications were found for lnc-C9orf43-6 Gene.

No data available for Mastermind for lnc-C9orf43-6 Gene

Products for lnc-C9orf43-6 Gene

Sources for lnc-C9orf43-6 Gene