Aliases for lnc-BARX2-3 Gene

Data sources for lnc-BARX2-3 Gene:

RNA type for lnc-BARX2-3 Gene

lncRNA

Aliases for lnc-BARX2-3 Gene

No data available for External Ids for lnc-BARX2-3 Gene

Summaries for lnc-BARX2-3 Gene

GeneCards Summary for lnc-BARX2-3 Gene

lnc-BARX2-3 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for lnc-BARX2-3 Gene

Additional gene information for lnc-BARX2-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for lnc-BARX2-3 Gene

Genomics for lnc-BARX2-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-BARX2-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J129202 Enhancer 0.6 Ensembl 0.7 +3.1 3074 0.6 CEBPA FOXA2 SAP130 RARA FOXP1 BCL6 ZNF205 SOX5 HMG20A NR2F6 RF00026-203 RNU6-874P ARHGAP32 lnc-BARX2-3 TP53AIP1
GH11J129189 Promoter/Enhancer 0.8 Ensembl ENCODE 0.4 -8.5 -8470 3.2 JUND CTBP1 ZNF217 SMARCE1 GATAD2B ARHGAP32 lnc-BARX2-3 ENSG00000206847 TP53AIP1
GH11J129141 Enhancer 1.1 FANTOM5 ENCODE 0.2 -55.5 -55475 5.3 ZNF600 SSRP1 JUND CEBPA CEBPB HOMEZ MAX KMT2B EP300 THAP11 ARHGAP32 lnc-BARX2-3 ENSG00000206847 TP53AIP1
GH11J129115 Enhancer 1 Ensembl ENCODE 0.2 -83.7 -83726 1.4 SSRP1 JUND CEBPA HOMEZ THAP11 FOXA2 KDM6A RXRA SMAD4 SAP130 ARHGAP32 lnc-BARX2-3 ENSG00000206847 TP53AIP1
GH11J129194 Enhancer 0.3 Ensembl 0.4 -5.3 -5326 0.2 PRDM1 ARHGAP32 lnc-BARX2-3 ENSG00000206847 TP53AIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-BARX2-3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-BARX2-3 Gene

Latest Assembly
chr11:129,199,827-129,203,455
(GRCh38/hg38)
Size:
3,629 bases
Orientation:
Plus strand

Genomic View for lnc-BARX2-3 Gene

Genes around lnc-BARX2-3 on UCSC Golden Path with GeneCards custom track
lnc-BARX2-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-BARX2-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-BARX2-3 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-BARX2-3 Gene

Proteins for lnc-BARX2-3 Gene

Post-translational modifications for lnc-BARX2-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-BARX2-3 Gene

Domains & Families for lnc-BARX2-3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-BARX2-3 Gene

Function for lnc-BARX2-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-BARX2-3 Gene

Localization for lnc-BARX2-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-BARX2-3 Gene

Pathways & Interactions for lnc-BARX2-3 Gene

PathCards logo

SuperPathways for lnc-BARX2-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-BARX2-3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-BARX2-3 Gene

Drugs & Compounds for lnc-BARX2-3 Gene

No Compound Related Data Available

Transcripts for lnc-BARX2-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-BARX2-3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BCBD5_9606 lncRNA 3629 1

LNCipedia: lnc-BARX2-3:1,

URS0001BDF719_9606 lncRNA 3628 1

LncBook: HSALNT0183290,

lnc-BARX2-3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-BARX2-3 Gene

No ASD Table

Relevant External Links for lnc-BARX2-3 Gene

GeneLoc Exon Structure for
lnc-BARX2-3

No data available for mRNA/cDNA for lnc-BARX2-3 Gene

Expression for lnc-BARX2-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-BARX2-3 Gene

Orthologs for lnc-BARX2-3 Gene

No data available for Orthologs and Evolution for lnc-BARX2-3 Gene

Paralogs for lnc-BARX2-3 Gene

No data available for Paralogs for lnc-BARX2-3 Gene

Variants for lnc-BARX2-3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-BARX2-3 Gene

Disorders for lnc-BARX2-3 Gene

No disorders were found for lnc-BARX2-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-BARX2-3 Gene

Publications for lnc-BARX2-3 Gene

No publications were found for lnc-BARX2-3 Gene.

No data available for Mastermind for lnc-BARX2-3 Gene

Products for lnc-BARX2-3 Gene

Sources for lnc-BARX2-3 Gene