lnc-AXDND1-1 Gene (RNA Gene)

 

GC01P179364
GIFtS:
4
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Aliases for lnc-AXDND1-1 Gene

Subcategory (RNA class) for lnc-AXDND1-1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-AXDND1-1 Gene

  • NONHSAG003595.2 91
  • Lnc-AXDND1-1 165

No data available for External Ids for lnc-AXDND1-1 Gene

Summaries for lnc-AXDND1-1 Gene

GeneCards Summary for lnc-AXDND1-1 Gene

lnc-AXDND1-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-AXDND1-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-AXDND1-1 Gene

Genomics for lnc-AXDND1-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for lnc-AXDND1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J179364 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.6 1599 2.6 RNF2 CREB1 PRDM10 ZNF629 ZNF512 RFX1 LEF1 POLR2A BACH1 TARDBP AXDND1 HSALNG0008757 lnc-AXDND1-1 LHX4 TDRD5 RALGPS2 SOAT1 TOR3A piR-53562-032 NPHS2
GH01J179363 Enhancer 0.9 ENCODE 600.7 -0.8 -832 0.2 IKZF1 MTA2 MTA1 REST ZNF24 ZNF740 HDAC1 FOXJ2 MGA GTF2E2 lnc-AXDND1-1 CEP350 AXDND1 LOC100420262 SOAT1
GH01J179353 Enhancer 0.7 Ensembl ENCODE 0.4 -10.4 -10446 1.3 JUND SP1 FOS FOSL1 NR2F2 RXRA IKZF1 CBFA2T3 AXDND1 lnc-AXDND1-1 LOC100420262 SOAT1
GH01J179309 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 -53.3 -53312 4.8 IKZF1 DPF2 TCF12 CEBPB NFE2 ZNF316 FOS TRIM24 NCOR1 FOSL1 AXDND1 ABL2 TOR3A SOAT1 TDRD5 LOC100420262 lnc-AXDND1-1
GH01J179326 Enhancer 0.7 FANTOM5 ENCODE 0.3 -36.4 -36390 3 JUND SPI1 CEBPB FOS MYC MAX AXDND1 TOR3A ABL2 TDRD5 SOAT1 FAM163A LOC100420262 lnc-AXDND1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-AXDND1-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-AXDND1-1 Gene

Genomic Locations for lnc-AXDND1-1 Gene
chr1:179,364,313-179,364,608
(GRCh38/hg38)
Size:
296 bases
Orientation:
Plus strand

Genomic View for lnc-AXDND1-1 Gene

Genes around lnc-AXDND1-1 on UCSC Golden Path with GeneCards custom track
lnc-AXDND1-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-AXDND1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-AXDND1-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-AXDND1-1 Gene

Proteins for lnc-AXDND1-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for lnc-AXDND1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-AXDND1-1 Gene

Domains & Families for lnc-AXDND1-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-AXDND1-1 Gene

Function for lnc-AXDND1-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-AXDND1-1 Gene

Localization for lnc-AXDND1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-AXDND1-1 Gene

Pathways & Interactions for lnc-AXDND1-1 Gene

PathCards logo

SuperPathways for lnc-AXDND1-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-AXDND1-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-AXDND1-1 Gene

Drugs & Compounds for lnc-AXDND1-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for lnc-AXDND1-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-AXDND1-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C136B_9606 lncRNA 296 2

LNCipedia: lnc-AXDND1-1:1,

NONCODE: NONHSAT007858.2,

lnc-AXDND1-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-AXDND1-1 Gene

No ASD Table

Relevant External Links for lnc-AXDND1-1 Gene

GeneLoc Exon Structure for
lnc-AXDND1-1

No data available for mRNA/cDNA for lnc-AXDND1-1 Gene

Expression for lnc-AXDND1-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-AXDND1-1 Gene

Orthologs for lnc-AXDND1-1 Gene

No data available for Orthologs and Evolution for lnc-AXDND1-1 Gene

Paralogs for lnc-AXDND1-1 Gene

No data available for Paralogs for lnc-AXDND1-1 Gene

Variants for lnc-AXDND1-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-AXDND1-1 Gene

Disorders for lnc-AXDND1-1 Gene

No disorders were found for lnc-AXDND1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-AXDND1-1 Gene

Publications for lnc-AXDND1-1 Gene

No publications were found for lnc-AXDND1-1 Gene.

No data available for Mastermind for lnc-AXDND1-1 Gene

Products for lnc-AXDND1-1 Gene

Sources for lnc-AXDND1-1 Gene