Aliases for lnc-ARID5A-1 Gene

Subcategory (RNA class) for lnc-ARID5A-1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for lnc-ARID5A-1 Gene

  • NONHSAG028614.2 91
  • Lnc-ARID5A-1 165

No data available for External Ids for lnc-ARID5A-1 Gene

Summaries for lnc-ARID5A-1 Gene

GeneCards Summary for lnc-ARID5A-1 Gene

lnc-ARID5A-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-ARID5A-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-ARID5A-1 Gene

Genomics for lnc-ARID5A-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-ARID5A-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J096535 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -30.8 -30792 4.3 ARHGAP35 SP1 HNRNPL TFE3 SIX5 KDM1A POLR2A BACH1 LARP7 MTA2 ARID5A ITPRIPL1 CNNM4 ENSG00000230747 CIAO1 GPAT2 lnc-ARID5A-1 FER1L5
GH02J096556 Enhancer 1.3 FANTOM5 ENCODE 0.4 -11.5 -11499 1.3 CREB1 GATAD2A ZBTB33 ATF7 ZNF629 TFE3 SOX13 NFKBIZ ZNF692 RCOR2 KANSL3 ANKRD36 SNRNP200 CNNM3 LMAN2L ARID5A ENSG00000277701 ENSG00000230606 DUSP2 TMEM127
GH02J096565 Enhancer 0.6 Ensembl ENCODE 0.7 -3.2 -3243 1 TEAD4 USF1 SIN3A ZNF781 PRDM12 LOC105373496 ARID5A CNNM4 ITPRIPL1 ENSG00000230747 lnc-ARID5A-1 FER1L5
GH02J096549 Enhancer 1.1 ENCODE dbSUPER 0.4 -18.1 -18119 1.1 HNRNPL GATAD2A CTCF REST TFE3 RCOR2 ZNF7 RBFOX2 RXRB IRF2 LMAN2L ENSG00000230747 ITPRIPL1 ARID5A lnc-ARID5A-1 FER1L5
GH02J096554 Enhancer 0.8 ENCODE 0.4 -14.0 -14025 0.2 HNRNPL CTCF TEAD4 PRDM10 BACH1 LARP7 ZNF143 RXRB REST RAD21 ADRA2B lnc-ARID5A-1 ARID5A FER1L5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-ARID5A-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-ARID5A-1 Gene

Genomic Locations for lnc-ARID5A-1 Gene
chr2:96,568,544-96,569,004
(GRCh38/hg38)
Size:
461 bases
Orientation:
Plus strand

Genomic View for lnc-ARID5A-1 Gene

Genes around lnc-ARID5A-1 on UCSC Golden Path with GeneCards custom track
lnc-ARID5A-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

lnc-ARID5A-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-ARID5A-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-ARID5A-1 Gene

Proteins for lnc-ARID5A-1 Gene

Post-translational modifications for lnc-ARID5A-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-ARID5A-1 Gene

Domains & Families for lnc-ARID5A-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-ARID5A-1 Gene

Function for lnc-ARID5A-1 Gene

Phenotypes From GWAS Catalog for lnc-ARID5A-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-ARID5A-1 Gene

Localization for lnc-ARID5A-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-ARID5A-1 Gene

Pathways & Interactions for lnc-ARID5A-1 Gene

PathCards logo

SuperPathways for lnc-ARID5A-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-ARID5A-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-ARID5A-1 Gene

Drugs & Compounds for lnc-ARID5A-1 Gene

No Compound Related Data Available

Transcripts for lnc-ARID5A-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-ARID5A-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BFA99_9606 lncRNA 461 2

LNCipedia: lnc-ARID5A-1:1,

NONCODE: NONHSAT072569.2,

lnc-ARID5A-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-ARID5A-1 Gene

No ASD Table

Relevant External Links for lnc-ARID5A-1 Gene

GeneLoc Exon Structure for
lnc-ARID5A-1

No data available for mRNA/cDNA for lnc-ARID5A-1 Gene

Expression for lnc-ARID5A-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-ARID5A-1 Gene

Orthologs for lnc-ARID5A-1 Gene

No data available for Orthologs and Evolution for lnc-ARID5A-1 Gene

Paralogs for lnc-ARID5A-1 Gene

No data available for Paralogs for lnc-ARID5A-1 Gene

Variants for lnc-ARID5A-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-ARID5A-1 Gene

Disorders for lnc-ARID5A-1 Gene

No disorders were found for lnc-ARID5A-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-ARID5A-1 Gene

Publications for lnc-ARID5A-1 Gene

No publications were found for lnc-ARID5A-1 Gene.

No data available for Mastermind for lnc-ARID5A-1 Gene

Products for lnc-ARID5A-1 Gene

Sources for lnc-ARID5A-1 Gene