Aliases for lnc-AP2S1-1 Gene

Subcategory (RNA class) for lnc-AP2S1-1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for lnc-AP2S1-1 Gene

  • HSALNG0126722 169
  • NONHSAG026104 94
  • Lnc-AP2S1-1 170

No data available for External Ids for lnc-AP2S1-1 Gene

Summaries for lnc-AP2S1-1 Gene

GeneCards Summary for lnc-AP2S1-1 Gene

lnc-AP2S1-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-AP2S1-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-AP2S1-1 Gene

Genomics for lnc-AP2S1-1 Gene

GeneHancer (GH) Regulatory Elements for lnc-AP2S1-1 Gene

Promoters and enhancers for lnc-AP2S1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046828 Enhancer 0.8 ENCODE 750.6 -1.4 -1377 2.1 CTCF MNT ZNF652 SP1 ZNF384 IKZF1 CREB1 POLR2A TARDBP GATAD2A ENSG00000269014 SNAR-E lnc-AP2S1-1 STRN4 FKRP PRKD2 ARHGAP35 SLC1A5
GH19J046824 Enhancer 0.8 ENCODE 0.6 +3.7 3742 2 SP1 ZBTB40 ETV6 HLF RAD21 MLLT1 ZNF687 PRDM1 TRIM24 IKZF1 SLC1A5 AP2S1 PRKD2 MIR320E FKRP ENSG00000269014 lnc-AP2S1-1 HNRNPMP2
GH19J046812 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 +14.7 14691 2 L3MBTL2 ELF3 AHR SP1 MLLT1 SP7 PRDM1 ZNF384 EGR1 ZIC2 FKRP BICRA PPP5D1 PNMA8A ENSG00000268746 SLC1A5 NOP53 ZC3H4 STRN4 NOP53-AS1
GH19J046819 Enhancer 0.9 ENCODE 0.4 +7.0 7049 3.1 SMARCE1 NR2F6 ZNF217 ZNF362 ELF3 NCOA3 POLR2A CEBPG SP7 PRDM1 FKRP SLC1A5 STRN4 PRKD2 PPP5D1 NOVA2 ENSG00000269014 lnc-AP2S1-1 HNRNPMP2
GH19J046816 Enhancer 0.8 Ensembl ENCODE 0.4 +12.0 12009 0.5 RBPJ ZNF362 ZNF384 TCF7 SAP130 BCOR ZFHX2 MXI1 ATF2 XRCC5 SLC1A5 STRN4 FKRP PRKD2 HNRNPMP2 lnc-AP2S1-1 ENSG00000269014
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-AP2S1-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for lnc-AP2S1-1 Gene

Genomic Locations for lnc-AP2S1-1 Gene
chr19:46,826,895-46,828,440
(GRCh38/hg38)
Size:
1,546 bases
Orientation:
Minus strand

Genomic View for lnc-AP2S1-1 Gene

Genes around lnc-AP2S1-1 on UCSC Golden Path with GeneCards custom track

lnc-AP2S1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-AP2S1-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-AP2S1-1 Gene

Proteins for lnc-AP2S1-1 Gene

Post-translational modifications for lnc-AP2S1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-AP2S1-1 Gene

Domains & Families for lnc-AP2S1-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-AP2S1-1 Gene

Function for lnc-AP2S1-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-AP2S1-1 Gene

Localization for lnc-AP2S1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-AP2S1-1 Gene

Pathways & Interactions for lnc-AP2S1-1 Gene

PathCards logo

SuperPathways for lnc-AP2S1-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-AP2S1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for lnc-AP2S1-1 Gene

Drugs & Compounds for lnc-AP2S1-1 Gene

No Compound Related Data Available

Transcripts for lnc-AP2S1-1 Gene

mRNA/cDNA for lnc-AP2S1-1 Gene

(1) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-AP2S1-1 Gene

No ASD Table

Relevant External Links for lnc-AP2S1-1 Gene

GeneLoc Exon Structure for
lnc-AP2S1-1

Expression for lnc-AP2S1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-AP2S1-1 Gene

Orthologs for lnc-AP2S1-1 Gene

No data available for Orthologs and Evolution for lnc-AP2S1-1 Gene

Paralogs for lnc-AP2S1-1 Gene

No data available for Paralogs for lnc-AP2S1-1 Gene

Variants for lnc-AP2S1-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-AP2S1-1 Gene

Disorders for lnc-AP2S1-1 Gene

No disorders were found for lnc-AP2S1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-AP2S1-1 Gene

Publications for lnc-AP2S1-1 Gene

No publications were found for lnc-AP2S1-1 Gene.

No data available for External Links for lnc-AP2S1-1 Gene

Products for lnc-AP2S1-1 Gene

Sources for lnc-AP2S1-1 Gene