Aliases for lnc-AMN1-1 Gene

Data sources for lnc-AMN1-1 Gene:

Subcategory (RNA class) for lnc-AMN1-1 Gene

lncRNA

Aliases for lnc-AMN1-1 Gene

No data available for External Ids for lnc-AMN1-1 Gene

Summaries for lnc-AMN1-1 Gene

GeneCards Summary for lnc-AMN1-1 Gene

lnc-AMN1-1 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for lnc-AMN1-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for lnc-AMN1-1 Gene

Genomics for lnc-AMN1-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for lnc-AMN1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J031726 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.9 -1924 9.1 ZSCAN16 TBP ZBTB10 MXD4 SP1 FEZF1 CEBPA ZNF217 SIX5 NR2C1 AMN1 ENSG00000276900 lnc-AMN1-1 piR-61945-095 ENSG00000257511 DDX11 DDX11-AS1 ENSG00000252204 BICD1 AK4P3
GH12J031714 Promoter/Enhancer 2 VISTA EPDnew Ensembl ENCODE dbSUPER 0.4 +13.5 13473 3 TBP CEBPA MNT IKZF1 SMAD5 MBD2 POLR2A ELF1 ARNT ZNF395 HSALNG0090223 STMN1P1 AMN1 piR-46847-060 lnc-AMN1-1 ETFBKMT
GH12J031721 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.5 6461 2.6 TBP BCL11A NBN IRF4 TRIM22 ZEB2 TAL1 RXRA SMARCA5 NCOR1 LOC105369722 AMN1 STMN1P1 lnc-AMN1-1 ETFBKMT
GH12J031718 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +10.3 10321 1.1 IKZF1 SMAD5 ZNF395 GTF2E2 VEZF1 NBN TAF9B SKIL PRDM10 CBX1 LOC105369722 STMN1P1 AMN1 lnc-AMN1-1 ETFBKMT
GH12J031724 Promoter 0.6 Ensembl 0.7 +4.5 4473 0.2 SPI1 ATF4 IKZF1 YY1 LOC105369722 AMN1 ENSG00000276900 lnc-AMN1-1 ETFBKMT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around lnc-AMN1-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for lnc-AMN1-1 Gene

Latest Assembly
chr12:31,671,136-31,729,174
(GRCh38/hg38)
Size:
58,039 bases
Orientation:
Minus strand

Genomic View for lnc-AMN1-1 Gene

Genes around lnc-AMN1-1 on UCSC Golden Path with GeneCards custom track
lnc-AMN1-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

lnc-AMN1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for lnc-AMN1-1 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for lnc-AMN1-1 Gene

Proteins for lnc-AMN1-1 Gene

Post-translational modifications for lnc-AMN1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for lnc-AMN1-1 Gene

Domains & Families for lnc-AMN1-1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for lnc-AMN1-1 Gene

Function for lnc-AMN1-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for lnc-AMN1-1 Gene

Localization for lnc-AMN1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for lnc-AMN1-1 Gene

Pathways & Interactions for lnc-AMN1-1 Gene

PathCards logo

SuperPathways for lnc-AMN1-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for lnc-AMN1-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for lnc-AMN1-1 Gene

Drugs & Compounds for lnc-AMN1-1 Gene

No Compound Related Data Available

Transcripts for lnc-AMN1-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for lnc-AMN1-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008C30C3_9606 lncRNA 2273 2

LNCipedia: lnc-AMN1-1:2,

NONCODE: NONHSAT027567.2,

URS0000D6E53C_9606 lncRNA 647 2

LncBook: HSALNT0187452,

LNCipedia: lnc-AMN1-1:5,

URS0000D6DE73_9606 lncRNA 565 2

LncBook: HSALNT0187454,

LNCipedia: lnc-AMN1-1:3,

URS0000D6DA3A_9606 lncRNA 430 2

LncBook: HSALNT0187453,

LNCipedia: lnc-AMN1-1:4,

URS0001BF2680_9606 lncRNA 879 1

LncBook: HSALNT0187447,

lnc-AMN1-1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for lnc-AMN1-1 Gene

No ASD Table

Relevant External Links for lnc-AMN1-1 Gene

GeneLoc Exon Structure for
lnc-AMN1-1

No data available for mRNA/cDNA for lnc-AMN1-1 Gene

Expression for lnc-AMN1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for lnc-AMN1-1 Gene

Orthologs for lnc-AMN1-1 Gene

No data available for Orthologs and Evolution for lnc-AMN1-1 Gene

Paralogs for lnc-AMN1-1 Gene

No data available for Paralogs for lnc-AMN1-1 Gene

Variants for lnc-AMN1-1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for lnc-AMN1-1 Gene

Disorders for lnc-AMN1-1 Gene

No disorders were found for lnc-AMN1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for lnc-AMN1-1 Gene

Publications for lnc-AMN1-1 Gene

No publications were found for lnc-AMN1-1 Gene.

No data available for Mastermind for lnc-AMN1-1 Gene

Products for lnc-AMN1-1 Gene

Sources for lnc-AMN1-1 Gene